RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KATNBL1Q9H079 304 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF358Q9NW07 568 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SPIN1Q9Y657 262 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 NEDD8-MDP1E9PL57 170 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 FMO3P31513 532 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ABCG1P45844 678 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 IDH3GP51553 393 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SNX29P2Q8IUI4 249 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SCELO95171 688 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 POU2F1P14859 743 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 CAPN3P20807 821 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC7A1P30825 629 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 RAB30Q15771 203 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC39A12Q504Y0 691 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 FRZBQ92765 325 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TMEM246Q9BRR3 403 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ARL8BQ9NVJ2 186 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 RAB21Q9UL25 225 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TESMINQ9Y4I5 508 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 NME7Q9Y5B8 376 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 CCND3P30281 292 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 AGTR1P30556 359 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 RBMXP38159 391 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SULT2A1Q06520 285 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TPRG1LQ5T0D9 272 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SWT1Q5T5J6 900 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ADGRD2Q7Z7M1 963 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 IQCHQ86VS3 1027 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 RAVER1Q8IY67 606 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC22A8Q8TCC7 542 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 GNG8Q9UK08 70 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TBX22Q9Y458 520 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TRAV6A0A075B6T7 132 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PER1O15534 1290 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PIP5K1CO60331 668 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SHBGP04278 402 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PPP5CP53041 499 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 MFSD2AQ8NA29 543 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PGLYRP2Q96PD5 576 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ADH1CP00326 375 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 IL1R1P14778 569 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 TMEM86AQ8N2M4 240 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SHKBP1Q8TBC3 707 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 PTBP2Q9UKA9 531 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ARGFXA6NJG6 315 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SCAF4O95104 1147 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 EEF1A1P68104 462 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 AUHQ13825 339 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 EEF1A1P5Q5VTE0 462 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 MSANTD2Q6P1R3 559 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 OR8S1Q8NH09 359 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 ICKQ9UPZ9 632 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 CCL15-CCL14A0A0B4J2E2 113 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 AVPR1BP47901 424 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 SEMA5AQ13591 1074 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 CCL15Q16663 113 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 STYK1Q6J9G0 422 aa13.11□□□□□ -0.31
CCDC88A-204ENST00000413716 FAM205CA6NFA0 338 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 MAGEB17A8MXT2 336 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 LRRN3E7EW58 273 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 TULP2O00295 520 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 APOC3P02656 99 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ALPPP05187 535 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CYP3A5P20815 502 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 GTF2A2P52657 109 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 BDH1Q02338 343 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 SPATA6LQ8N4H0 392 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 LRRN3Q9H3W5 708 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 PKMP14618 531 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 NCS1P62166 190 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 NFKB2Q00653 900 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 FGL2Q14314 439 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 C7orf34Q96L11 122 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 GADD45GO95257 159 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC35G6P0C7Q6 338 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 GNRHRP30968 328 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 C2orf80Q0P641 193 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 NIPAL3Q6P499 406 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 TAS1R2Q8TE23 839 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 COPS5Q92905 334 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ASAH2Q9NR71 780 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 TNFRSF10DQ9UBN6 386 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 TLR6Q9Y2C9 796 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZFYVE16Q7Z3T8 1539 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CNTNAP5Q8WYK1 1306 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 hCG_2039718K7EN88 272 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 PRDX6P30041 224 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 RRAS2P62070 204 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 SEC23AQ15436 765 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ANKDD1AQ495B1 522 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 KLHDC10Q6PID8 442 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF334Q9HCZ1 680 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 MKKSQ9NPJ1 570 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 NPIPA5E9PKD4 350 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF460Q14592 562 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZACNQ401N2 412 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 MOXD1Q6UVY6 613 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 CNTD1Q8N815 330 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF606Q8WXB4 792 aa13.1□□□□□ -0.31
CCDC88A-204ENST00000413716 MECRQ9BV79 373 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms