RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 GALNT13Q8IUC8 556 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 RASGRP3Q8IV61 690 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 SPACA3Q8IXA5 215 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 IQCKQ8N0W5 287 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 FSTL5Q8N475 847 aaPredicted RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 GDAP1Q8TB36 358 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 DCAKDQ8WVC6 231 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 DEPDC7Q96QD5 511 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 PAFAH2Q99487 392 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CCM2Q9BSQ5 444 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 PPANQ9NQ55 473 aaKnown RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 FBXO6Q9NRD1 293 aaPredicted RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 SLC23A2Q9UGH3 650 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 SLC24A2Q9UI40 661 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CDYLQ9Y232 598 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CRYL1Q9Y2S2 319 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 PRKAB1Q9Y478 270 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 HRH3Q9Y5N1 445 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 PCM1Q15154 2024 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 A0A087WV48 116 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 A0A1W2PQM1 296 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 SLC5A10A0PJK1 596 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 EME2A4GXA9 379 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 OR2AG2A6NM03 316 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 LMO7DNF2Z398 122 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 EIF3FO00303 357 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 TPP1O14773 563 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 LIN7AO14910 233 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 KLK10O43240 276 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ERLIN1O75477 346 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 GPC4O75487 556 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 POP7O75817 140 aaKnown RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 PIAS1O75925 651 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 SLCO2B1O94956 709 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ASMTLO95671 621 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 SHBGP04278 402 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 RPLP0P05388 317 aaKnown RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 FDXRP22570 491 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 MPSTP25325 297 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 CNTFP26441 200 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ATP5DP30049 168 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 SPRP35270 261 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 MAGEA12P43365 314 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 GNPDA1P46926 289 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 E2F1Q01094 437 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 CTBSQ01459 385 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 PLOD1Q02809 727 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 RPA4Q13156 261 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ILKQ13418 452 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ZKSCAN8Q15776 578 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 AMZ1Q400G9 498 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 RBM20Q5T481 1227 aaKnown RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 KIAA1614Q5VZ46 1190 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 OGFOD3Q6PK18 319 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 SLC30A9Q6PML9 568 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 AMZ2Q86W34 360 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 TRAPPC5Q8IUR0 188 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 BEND7Q8N7W2 519 aaPredicted RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 PPM1NQ8N819 430 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 FAM181AQ8N9Y4 354 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 FAM46DQ8NEK8 389 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 GIMAP7Q8NHV1 300 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 HM13Q8TCT9 377 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 LKAAEAR1Q8TD35 194 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 FGF11Q92914 225 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 VPS39Q96JC1 886 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 PANX3Q96QZ0 392 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 DUSP23Q9BVJ7 150 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 NRSN2Q9GZP1 204 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 DPEP2Q9H4A9 486 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 CARS2Q9HA77 564 aaKnown RBP8.98□□□□□ -0.97
VPS53-203ENST00000401468 RDH14Q9HBH5 336 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 POPDC3Q9HBV1 291 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 ASCL3Q9NQ33 180 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 DKK4Q9UBT3 224 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 DHRS7Q9Y394 339 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 RNF215Q9Y6U7 377 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 COL6A6A6NMZ7 2263 aa8.98□□□□□ -0.97
VPS53-203ENST00000401468 EXOC1LA0A1B0GW35 172 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 UBA6A0AVT1 1052 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 KPNA5O15131 536 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 NIPSNAP2O75323 286 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 TNFSF15O95150 251 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ITGA2BP08514 1039 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 F7P08709 466 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 ITIH1P19827 911 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 FMO4P31512 558 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 CCR7P32248 378 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ETV5P41161 510 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 SKIV2L2P42285 1042 aaKnown RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 SERPINB9P50453 376 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 DUSP3P51452 185 aaPredicted RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 CDKN2DP55273 166 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 EIF3BP55884 814 aaKnown RBP8.97□□□□□ -0.97
VPS53-203ENST00000401468 POU4F1Q01851 419 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 TLE3Q04726 772 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ILF3Q12906 894 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS53-203ENST00000401468 SPIDRQ14159 915 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 ELOCQ15369 112 aa8.97□□□□□ -0.97
VPS53-203ENST00000401468 TGIF1Q15583 401 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms