RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 AOAHP28039 575 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 NSG1P42857 185 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 GBX1Q14549 363 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 PHACTR4Q8IZ21 702 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 SLC13A3Q8WWT9 602 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 MPP4Q96JB8 637 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 P2RY13Q9BPV8 354 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 DDX18Q9NVP1 670 aaKnown RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 ANGPTL3Q9Y5C1 460 aa13.08□□□□□ -0.32
CCDC3-202ENST00000378839 HEMK1Q9Y5R4 338 aaPredicted RBP13.08□□□□□ -0.32
CCDC3-202ENST00000378839 RNF103-CHMP3A0A140T963 221 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 TMEM202A6NGA9 273 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 NEDD8-MDP1E9PL57 170 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ULK1O75385 1050 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 RFPL2O75678 378 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 STK16O75716 305 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 SEC24DO94855 1032 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 NPPAP01160 153 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 EBLN1P0CF75 366 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 GGT1P19440 569 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 MAPK8P45983 427 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 RPIAP49247 311 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 IST1P53990 364 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 NR1H2P55055 460 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ERVFC1P60507 584 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 SNRPD1P62314 119 aaKnown RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 HSPA14Q0VDF9 509 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 CRY1Q16526 586 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 TMEM214Q6NUQ4 689 aaKnown RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 OTOP2Q7RTS6 562 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ADIPOR2Q86V24 386 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 PACRGLQ8N7B6 248 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 OR10A6Q8NH74 314 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 C19orf43Q9BQ61 176 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 CLMPQ9H6B4 373 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 TMEM45AQ9NWC5 275 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 TRPS1Q9UHF7 1281 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 MYRFQ9Y2G1 1151 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 SEC22BO75396 215 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LRG1P02750 347 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 BCKDHAP12694 445 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF23P17027 643 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 CDH2P19022 906 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 SPINT3P49223 89 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 TMED1Q13445 227 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LRRC26Q2I0M4 334 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LYPLAL1Q5VWZ2 237 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF551Q7Z340 670 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 HSD11B1LQ7Z5J1 315 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 MAGEE2Q8TD90 523 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ASIC4Q96FT7 647 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 RMND5BQ96G75 393 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 AURKBQ96GD4 344 aaPredicted RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 PPP3R2Q96LZ3 170 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 COPS8Q99627 209 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 MUC13Q9H3R2 512 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LIN28AQ9H9Z2 209 aaKnown RBP13.07□□□□□ -0.32
CCDC3-202ENST00000378839 LRTM1Q9HBL6 345 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 HPS4Q9NQG7 708 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 ARL15Q9NXU5 204 aa13.07□□□□□ -0.32
CCDC3-202ENST00000378839 UPK3BL1B0FP48 263 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 UPK3BL2E5RIL1 263 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 RGS14O43566 566 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 EPB42P16452 691 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 MSH3P20585 1137 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TPP2P29144 1249 aaPredicted RBP13.06□□□□□ -0.32
CCDC3-202ENST00000378839 GNPDA1P46926 289 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CLCN2P51788 898 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CARD16Q5EG05 197 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 KRT80Q6KB66 452 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 KLHL23Q8NBE8 558 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 OR2A12Q8NGT7 310 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 VPS50Q96JG6 964 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 EGLN2Q96KS0 407 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 YME1L1Q96TA2 773 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 INPP5KQ9BT40 448 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 SERHLQ9NQF3 203 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 PFDN4Q9NQP4 134 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 KCTD5Q9NXV2 234 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 PPT2Q9UMR5 302 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TRBV5-3A0A0A0MS03 114 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 GRXCR2A6NFK2 248 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ATP6V1G1O75348 118 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CXCL14O95715 111 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 PGRP06401 933 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 UBE2R2Q712K3 238 aaPredicted RBP13.06□□□□□ -0.32
CCDC3-202ENST00000378839 KREMEN2Q8NCW0 462 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ZNF548Q8NEK5 533 aaPredicted RBP13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CYGBQ8WWM9 190 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 ASB11Q8WXH4 323 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 C9orf16Q9BUW7 83 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TRIM64A6NGJ6 449 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CLTBP09497 229 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 CDKN2CP42773 168 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 LAPTM5Q13571 262 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TEAD2Q15562 447 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 TMTC4Q5T4D3 741 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 USP45Q70EL2 814 aa13.06□□□□□ -0.32
CCDC3-202ENST00000378839 SPRED2Q7Z698 418 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms