RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 GRB7Q14451 532 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 KLHL38Q2WGJ6 581 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 TBC1D25Q3MII6 688 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 CCSMST1Q4G0I0 132 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 GLE1Q53GS7 698 aaKnown RBP12.97□□□□□ -0.33
VPS28-202ENST00000377348 ARMC6Q6NXE6 501 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 UNC5DQ6UXZ4 953 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 PRSS42Q7Z5A4 293 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 STRA8Q7Z7C7 330 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 AMIGO1Q86WK6 493 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 DCUN1D3Q8IWE4 304 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 CPNE9Q8IYJ1 553 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 ADGRF3Q8IZF5 1079 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 LSMEM2Q8N112 164 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 GPATCH11Q8N954 259 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 CD200R1Q8TD46 325 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 USP7Q93009 1102 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 ZDHHC12Q96GR4 267 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 IL17FQ96PD4 163 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 PHACTR1Q9C0D0 580 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 FAM114A2Q9NRY5 505 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 POLG2Q9UHN1 485 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 DHRS7Q9Y394 339 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 COMMD10Q9Y6G5 202 aa12.97□□□□□ -0.33
VPS28-202ENST00000377348 TCRBV9S1A1TA0A576 114 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 GSAPA4D1B5 854 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 CDRT15L2A8MXV6 281 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 CXorf49A8MYA2 514 aaPredicted RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 PRAMEF10O60809 474 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 VPS26AO75436 327 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 C1orf105O95561 183 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 ANKRD34CP0C6C1 535 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 RHOXF2BP0C7M4 288 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 MCM3P25205 808 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 ATP5DP30049 168 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 ECHS1P30084 290 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 SH3BP2P78314 561 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 PRKAA1Q13131 559 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 TTLL9Q3SXZ7 439 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 UBAP2Q5T6F2 1119 aaKnown RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 IGF2-ASQ6U949 168 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 C3orf62Q6ZUJ4 267 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 PIWIL4Q7Z3Z4 852 aaKnown RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 GALNT7Q86SF2 657 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 C2orf73Q8N5S3 287 aaPredicted RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 BMPERQ8N8U9 685 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 INPP5DQ92835 1189 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 FGF11Q92914 225 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 RNF31Q96EP0 1072 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 ZNF578Q96N58 590 aaPredicted RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 CTRCQ99895 268 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 RHOXF2Q9BQY4 288 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 MENTQ9BUN1 341 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 LRRC4CQ9HCJ2 640 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 APMAPQ9HDC9 416 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 THSD1Q9NS62 852 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 SPHK1Q9NYA1 384 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 FOXJ2Q9P0K8 574 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 TRMT6Q9UJA5 497 aaKnown RBP12.96□□□□□ -0.33
VPS28-202ENST00000377348 POMT2Q9UKY4 750 aa12.96□□□□□ -0.33
VPS28-202ENST00000377348 DSPP15924 2871 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 TLCD2A6NGC4 264 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 C9orf172C9J069 976 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 TOX3O15405 576 aaPredicted RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 MATN4O95460 622 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 C1QAP02745 245 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 RPN2P04844 631 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 PEBP1P30086 187 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 PKLRP30613 574 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 SLC5A2P31639 672 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 SHMT2P34897 504 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 ERVPABLB-1P60509 514 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 KCNAB1Q14722 419 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 KYNUQ16719 465 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 HECTD2Q5U5R9 776 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 PAQR3Q6TCH7 311 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 CLEC14AQ86T13 490 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 TAX1BP1Q86VP1 789 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 LINC01555Q8NAE3 123 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 FBF1Q8TES7 1133 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 KLHL6Q8WZ60 621 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 NAF1Q96HR8 494 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 FOPNLQ96NB1 174 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 DCBLD2Q96PD2 775 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 OLFM1Q99784 485 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 KLHL25Q9H0H3 589 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 ZNF768Q9H5H4 540 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 L2HGDHQ9H9P8 463 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 SIDT1Q9NXL6 827 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 SLC39A1Q9NY26 324 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 TAS2R13Q9NYV9 303 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 ACTR10Q9NZ32 417 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 KLHL42Q9P2K6 505 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 CFAP47Q6ZTR5 3102 aa12.95□□□□□ -0.34
VPS28-202ENST00000377348 URB1O60287 2271 aaKnown RBP12.95□□□□□ -0.34
VPS28-202ENST00000377348 PKD1L2Q7Z442 2459 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 PIPSLA2A3N6 862 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 FAM159BA6NKW6 160 aa12.94□□□□□ -0.34
VPS28-202ENST00000377348 SRRM3A6NNA2 597 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms