RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KAT8Q9H7Z6 458 aaKnown RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 SCUBE2Q9NQ36 999 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 KLQ9UEF7 1012 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 STX7O15400 261 aaKnown RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 FFAR2O15552 330 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 MT-ND2P03891 347 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 S100BP04271 92 aaPredicted RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 GSNP06396 782 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 SLC6A4P31645 630 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 NPTX1Q15818 432 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 CES5AQ6NT32 575 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 OR6Q1Q8NGQ2 317 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 RPL3LQ92901 407 aaKnown RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 YIPF6Q96EC8 236 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 OR52E6Q96RD3 313 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 ZNF300Q96RE9 604 aaPredicted RBP16.05■□□□□ 0.16
SDC4-201ENST00000372733 RAI2Q9Y5P3 530 aa16.05■□□□□ 0.16
SDC4-201ENST00000372733 TTC36A6NLP5 189 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 F5H5T6 163 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 AREL1O15033 823 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 PARNO95453 639 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 RETP07949 1114 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 GSTT2P0CG29 244 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 GSTT2BP0CG30 244 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 ITGAMP11215 1152 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 MYCLP1P12525 358 aaPredicted RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 THPOP40225 353 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 SMN1Q16637 294 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 DGUOKQ16854 277 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 AGAP7PQ5VUJ5 663 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 LRRC8DQ7L1W4 858 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 ADAMTSL2Q86TH1 951 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 DYNC2LI1Q8TCX1 351 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 UROC1Q96N76 676 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 MYOCQ99972 504 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 APOL5Q9BWW9 433 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 KLHL25Q9H0H3 589 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 FBXO8Q9NRD0 319 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 PRG3Q9Y2Y8 225 aaPredicted RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 TNPO3Q9Y5L0 923 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 GPC6Q9Y625 555 aaPredicted RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 TRPM7Q96QT4 1865 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 GREB1Q4ZG55 1949 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 TRBV5-3A0A0A0MS03 114 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 TAPBPO15533 448 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 CR2P20023 1033 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 RPS24P62847 133 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 SLC35A2P78381 396 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 CARD16Q5EG05 197 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 VARS2Q5ST30 1063 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 CATSPEREQ5SY80 951 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 PLEKHG7Q6ZR37 379 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 FKBP9P1Q75LS8 142 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 CEP68Q76N32 757 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 ANKRD46Q86W74 232 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 HIPK1Q86Z02 1210 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 FAM120BQ96EK7 910 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 REXO5Q96IC2 774 aaKnown RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 CLMPQ9H6B4 373 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 SPC25Q9HBM1 224 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 NECTIN3Q9NQS3 549 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 KIAA1522Q9P206 1035 aaPredicted RBP16.04■□□□□ 0.16
SDC4-201ENST00000372733 PKP3Q9Y446 797 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 PCDHGB1Q9Y5G3 927 aa16.04■□□□□ 0.16
SDC4-201ENST00000372733 PFDN6O15212 129 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 RGS14O43566 566 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 TLR5O60602 858 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ESR1P03372 595 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ALOX5P09917 674 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ACVR2AP27037 513 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CLK3P49761 638 aaKnown RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 ARPP19P56211 112 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 IL18R1Q13478 541 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 GTF2H3Q13889 308 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CLCA4Q14CN2 919 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 C1QTNF12Q5T7M4 302 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CPZQ66K79 652 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SERINC5Q86VE9 423 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CPPED1Q9BRF8 314 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 MAGIXQ9H6Y5 334 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 C1orf109Q9NX04 203 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 AGO1Q9UL18 857 aaKnown RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 ABCG2Q9UNQ0 655 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 NOD1Q9Y239 953 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 FAM220BPB1ANY3 271 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SEC22BO75396 215 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CD9P21926 228 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 PSMA3P25788 255 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SERPINB10P48595 397 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 CLCN4P51793 760 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 PHC1P78364 1004 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 DSC3Q14574 896 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 NFE2Q16621 373 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 HIST2H2ACQ16777 129 aaPredicted RBP16.03■□□□□ 0.16
SDC4-201ENST00000372733 RFX4Q33E94 735 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 GNASQ5JWF2 1037 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SPRYD7Q5W111 196 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 SLC22A16Q86VW1 577 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 ZDHHC21Q8IVQ6 265 aa16.03■□□□□ 0.16
SDC4-201ENST00000372733 MINDY2Q8NBR6 621 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms