RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MAGEB3O15480 346 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TLL1O43897 1013 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 C8BP07358 591 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 MXD1Q05195 221 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 PLA2G4EQ3MJ16 856 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 AKIRIN2Q53H80 203 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TCEAL5Q5H9L2 206 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF311Q5JNZ3 666 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 LCN1P1Q5VSP4 162 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CXorf57Q6NSI4 855 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 OLFML1Q6UWY5 402 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SAMD14Q8IZD0 417 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SLC22A17Q8WUG5 538 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 IPCEF1Q8WWN9 437 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 SMG7Q92540 1137 aaKnown RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 ZBED6CLQ96FA7 236 aaPredicted RBP11.23□□□□□ -0.61
PTPRF-203ENST00000372407 CGREF1Q99674 301 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 DSN1Q9H410 356 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 FNIP2Q9P278 1114 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 TLR6Q9Y2C9 796 aa11.23□□□□□ -0.61
PTPRF-203ENST00000372407 OR51F1A6NGY5 319 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 XKRYO14609 159 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 OR1F1O43749 312 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 NOBOXO60393 691 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 NIPSNAP2O75323 286 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 REM1O75628 298 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 RGS20O76081 388 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 HLA-DQB2P05538 268 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 MTHFD1P11586 935 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 CMPK1P30085 196 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 HSPB3Q12988 150 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 PLPP4Q5VZY2 271 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 SNX20Q7Z614 316 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 PJA1Q8NG27 643 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 C2orf15Q8WU43 125 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 RPL10LQ96L21 214 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 C5orf34Q96MH7 638 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 GPR22Q99680 433 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 POLR2J3Q9H1A7 115 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF395Q9H8N7 513 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 AMBNQ9NP70 447 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 CD84Q9UIB8 345 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 SNX7Q9UNH6 387 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 COLEC10Q9Y6Z7 277 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ENPP3O14638 875 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 TEX28O15482 410 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 PGRP06401 933 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 CDH1P12830 882 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 RYKP34925 604 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 MLLT6P55198 1093 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 RPS24P62847 133 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 SLC10A7Q0GE19 358 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 E2F2Q14209 437 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 CYP2U1Q7Z449 544 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 GALNT13Q8IUC8 556 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 NPAS4Q8IUM7 802 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 SMG8Q8ND04 991 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 WRAP53Q9BUR4 548 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 GSDMCQ9BYG8 508 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 POLR2J2Q9GZM3 115 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 PCBD2Q9H0N5 130 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 MED28Q9H204 178 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ANKRA2Q9H9E1 313 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 MSRAQ9UJ68 235 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ERVW-1Q9UQF0 538 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ARL5AQ9Y689 179 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 GON4LQ3T8J9 2241 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 CLDN4O14493 209 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 TOR1BO14657 336 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 KRT33AO76009 404 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 AHSGP02765 367 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 APODP05090 189 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 SLC35G6P0C7Q6 338 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 TFPIP10646 304 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 PRKCHP24723 683 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 RHDQ02161 417 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ATXN7L2Q5T6C5 722 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 FAM124AQ86V42 546 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ERI1Q8IV48 349 aaKnown RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ZNF514Q96K75 400 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 MIPEPQ99797 713 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 POLR3BQ9NW08 1133 aaPredicted RBP11.22□□□□□ -0.61
PTPRF-203ENST00000372407 TAS2R7Q9NYW3 318 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 ARFGEF2Q9Y6D5 1785 aa11.22□□□□□ -0.61
PTPRF-203ENST00000372407 FAM172BPA6NC97 362 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 CPSF4LA6NMK7 179 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 SEPT4O43236 478 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 TBX1O43435 398 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 RNASEH2AO75792 299 aaKnown RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 TSPAN9O75954 239 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 ARFIP1P53367 373 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 RABGGTBP53611 331 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 HMGCS1Q01581 520 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 OGDHQ02218 1023 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 TMEM44Q2T9K0 475 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 ZBED5Q49AG3 693 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 NADK2Q4G0N4 442 aa11.21□□□□□ -0.61
PTPRF-203ENST00000372407 CRTC2Q53ET0 693 aaPredicted RBP11.21□□□□□ -0.61
PTPRF-203ENST00000372407 CCDC36Q8IYA8 594 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms