RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PSMD12O00232 456 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 WDR47O94967 919 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 ATP6V1G2O95670 118 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FUCA1P04066 466 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 EBLN1P0CF75 366 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 ITPKAP23677 461 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 ATP4BP51164 291 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 DIO3P55073 304 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 RIPK1Q13546 671 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FASTKQ14296 549 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 DNAL1Q4LDG9 190 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SFRP1Q8N474 314 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SPDYE1Q8NFV5 336 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 RCN3Q96D15 328 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SLC45A3Q96JT2 553 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 THTPAQ9BU02 230 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SLC17A9Q9BYT1 436 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FARSBQ9NSD9 589 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 STOX2Q9P2F5 926 aaPredicted RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SLC22A14Q9Y267 594 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 MGAT4DA6NG13 374 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FFAR3O14843 346 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 AIM2O14862 343 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 GPR42O15529 346 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 VPS4BO75351 444 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 C1orf105O95561 183 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 CATP04040 527 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 NDUFV2P19404 249 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 ACADLP28330 430 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 TEAD1P28347 426 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 IMPA1P29218 277 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 MAT2AP31153 395 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 RAP1GDS1P52306 607 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SKIV2LQ15477 1246 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 SMAD2Q15796 467 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 AGKQ53H12 422 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 KIAA1161Q6NSJ0 714 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 TTC23LQ6PF05 361 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 PAOXQ6QHF9 649 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 IL27RAQ6UWB1 636 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FAM124AQ86V42 546 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 HORMAD1Q86X24 394 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 ULK2Q8IYT8 1036 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 HM13Q8TCT9 377 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 WDR60Q8WVS4 1066 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FAM3CQ92520 227 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 PKP4Q99569 1192 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 OR52A5Q9H2C5 316 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 WDR26Q9H7D7 661 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 FZD3Q9NPG1 666 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 INTS7Q9NVH2 962 aaKnown RBP13.43□□□□□ -0.26
PTPRF-202ENST00000372405 CCDC167Q9P0B6 97 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 TRPS1Q9UHF7 1281 aa13.43□□□□□ -0.26
PTPRF-202ENST00000372405 KCNE1BA0A087WTH5 132 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3DA0A087WVF3 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3IA0A087WXS9 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3EA0A087X179 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3KA0A087X1G2 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3FA6NER0 549 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3LB9A6J9 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 FBP2O00757 339 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 SLC16A8O95907 504 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3HP0C7X1 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 GLULP15104 373 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 MAP4P27816 1152 aaKnown RBP13.42□□□□□ -0.26
PTPRF-202ENST00000372405 IGFALSP35858 605 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 NUDT2P50583 147 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 NME5P56597 212 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 C6orf136Q5SQH8 315 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3GQ6DHY5 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3CQ6IPX1 549 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 DEFB107AQ8IZN7 70 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 TBC1D3Q8IZP1 549 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-202ENST00000372405 CCDC138Q96M89 665 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 CCT7Q99832 543 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 SDR39U1Q9NRG7 319 aaPredicted RBP13.42□□□□□ -0.26
PTPRF-202ENST00000372405 FZD4Q9ULV1 537 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 GPR45Q9Y5Y3 372 aa13.42□□□□□ -0.26
PTPRF-202ENST00000372405 LSM1O15116 133 aaKnown RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SORBS2O94875 1100 aaKnown RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 HMOX2P30519 316 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 HNRNPH1P31943 449 aaKnown RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ACADVLP49748 655 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SGCGQ13326 291 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 MAP7D1Q3KQU3 841 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 TTC31Q49AM3 519 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 TMEM31Q5JXX7 168 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 AGTRAPQ6RW13 159 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 USP30Q70CQ3 517 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 Q7L0L9 218 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 LRRTM4Q86VH4 590 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 SCUBE1Q8IWY4 988 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 OXR1Q8N573 874 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 FBXO15Q8NCQ5 510 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-202ENST00000372405 PPFIBP2Q8ND30 876 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 USP7Q93009 1102 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 OR4K3Q96R72 315 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 NPAS2Q99743 824 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 C1orf50Q9BV19 199 aa13.41□□□□□ -0.26
PTPRF-202ENST00000372405 ZDHHC5Q9C0B5 715 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms