RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 IL1RAPL1Q9NZN1 696 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PADI1Q9ULC6 663 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 TENM4Q6N022 2769 aa17.8■□□□□ 0.44
CLN3-202ENST00000355477 PIPSLA2A3N6 862 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 CES2O00748 559 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 APOA4P06727 396 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 CHRM5P08912 532 aaPredicted RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 CCNYL3P0C7X3 344 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 RPS3P23396 243 aaKnown RBP eCLIP17.79■□□□□ 0.444e-6■■□□□ 12.9
CLN3-202ENST00000355477 OAS2P29728 719 aaKnown RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 EIF3BP55884 814 aaKnown RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 DNAJC21Q5F1R6 531 aaKnown RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 CTSL3PQ5NE16 218 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 TMTC4Q5T4D3 741 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 ATP1A1-AS1Q5TC04 95 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 KIAA0930Q6ICG6 404 aaPredicted RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 CASC4Q6P4E1 433 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 FAM199XQ6PEV8 388 aaPredicted RBP17.79■□□□□ 0.44
CLN3-202ENST00000355477 SPESP1Q6UW49 350 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 TRIM73Q86UV7 250 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 AGGF1Q8N302 714 aaeCLIP17.79■□□□□ 0.44
CLN3-202ENST00000355477 OTUD6BQ8N6M0 293 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 SLC38A9Q8NBW4 561 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 MCUQ8NE86 351 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 CFAP61Q8NHU2 1237 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 CT55Q8WUE5 264 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 BIRC8Q96P09 236 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 OR2A14Q96R47 310 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 TWSG1Q9GZX9 223 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 LHX9Q9NQ69 397 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 CIDEBQ9UHD4 219 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 GNPTGQ9UJJ9 305 aa17.79■□□□□ 0.44
CLN3-202ENST00000355477 SDR42E2A6NKP2 422 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 KATNA1O75449 491 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 SCRG1O75711 98 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 MT-ND3P03897 115 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 MLNP12872 115 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 UGT2B7P16662 529 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 TCN2P20062 427 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 FMO4P31512 558 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 CDC20Q12834 499 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 TYSND1Q2T9J0 566 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 MRNIPQ6NTE8 343 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 C16orf46Q6P387 395 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 BORAQ6PGQ7 559 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 SDCCAG8Q86SQ7 713 aaPredicted RBP17.78■□□□□ 0.44
CLN3-202ENST00000355477 LRRC6Q86X45 466 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 TMEM126BQ8IUX1 230 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 NAT8LQ8N9F0 302 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 LMNTD1Q8N9Z9 388 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 OR8K5Q8NH50 307 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 OR1L3Q8NH93 324 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 LPGAT1Q92604 370 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 SERPINB12Q96P63 405 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 MENTQ9BUN1 341 aa17.78■□□□□ 0.44
CLN3-202ENST00000355477 FAM237BA0A1B0GVD1 139 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 F7P08709 466 aaPredicted RBP17.77■□□□□ 0.44
CLN3-202ENST00000355477 PEBP1P30086 187 aaKnown RBP17.77■□□□□ 0.44
CLN3-202ENST00000355477 MAGEA3P43357 314 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 FNTAP49354 379 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 GRB7Q14451 532 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 ZIC1Q15915 447 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 KYNUQ16719 465 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 ANKRD20A4Q4UJ75 823 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 ZNF789Q5FWF6 425 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 CDHR3Q6ZTQ4 885 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 CENPUQ71F23 418 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 LINC01555Q8NAE3 123 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 GRK7Q8WTQ7 553 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 PANX3Q96QZ0 392 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 RUFY1Q96T51 708 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 DDX47Q9H0S4 455 aaKnown RBP17.77■□□□□ 0.44
CLN3-202ENST00000355477 XAB2Q9HCS7 855 aaKnown RBP17.77■□□□□ 0.44
CLN3-202ENST00000355477 FAM60AQ9NP50 221 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 LATS2Q9NRM7 1088 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 OR6C2Q9NZP2 312 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 CRYL1Q9Y2S2 319 aa17.77■□□□□ 0.44
CLN3-202ENST00000355477 MED13Q9UHV7 2174 aa17.77■□□□□ 0.43
CLN3-202ENST00000355477 GOLGA6L10A0A0M3HER8 536 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 MAGEB16A2A368 324 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 TMEM150CB9EJG8 249 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 HCRTR1O43613 425 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 NIPSNAP2O75323 286 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 FURINP09958 794 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 MSL3P1P0C860 447 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 PKLRP30613 574 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 GPS2Q13227 327 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 DNASE1L3Q13609 305 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 DHX34Q14147 1143 aaKnown RBP17.76■□□□□ 0.43
CLN3-202ENST00000355477 TMED2Q15363 201 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 CRTC2Q53ET0 693 aaPredicted RBP17.76■□□□□ 0.43
CLN3-202ENST00000355477 ARMC3Q5W041 872 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 LCN10Q6JVE6 187 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 NEPROQ6NW34 567 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 OTOAQ7RTW8 1153 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 TMEM135Q86UB9 458 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 CILP2Q8IUL8 1156 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 FAM20CQ8IXL6 584 aa17.76■□□□□ 0.43
CLN3-202ENST00000355477 C2orf73Q8N5S3 287 aaPredicted RBP17.76■□□□□ 0.43
CLN3-202ENST00000355477 ZNF669Q96BR6 464 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms