RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 RPS27AP62979 156 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 UBA52P62987 128 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 GNMTQ14749 295 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ZNRF3Q9ULT6 936 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ATP5C1P36542 298 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 DPP6P42658 865 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 TAS2R31P59538 309 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 FRRS1Q6ZNA5 592 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF433Q8N7K0 673 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 TWIST2Q8WVJ9 160 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SHC3Q92529 594 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 GPN2Q9H9Y4 310 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 LYARQ9NX58 379 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SNX10Q9Y5X0 201 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 PRKCAP17252 672 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CDNFQ49AH0 187 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 AGAP6Q5VW22 663 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 OR2L3Q8NG85 312 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 COQ8AQ8NI60 647 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TMEM80Q96HE8 168 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 AGAP4Q96P64 663 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 HEPHQ9BQS7 1158 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 SHROOM3Q8TF72 1996 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CHURC1-FNTBB4DL54 471 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 H3BUI4 141 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 DNASE1L1P49184 302 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MCCD1P59942 119 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CERS6Q6ZMG9 384 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 GID4Q8IVV7 300 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 GPR65Q8IYL9 337 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ASB13Q8WXK3 278 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 OSTF1Q92882 214 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 A0A1B0GVM2 712 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TCAF2A6NFQ2 919 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ADRA2BP18089 450 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 PUS10Q3MIT2 529 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 HACD2Q6Y1H2 254 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 GK5Q6ZS86 529 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TPGS1Q6ZTW0 290 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ZFP3Q96NJ6 502 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 SMURF1Q9HCE7 757 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ARPC2O15144 300 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TGFB3P10600 412 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 NR4A2P43354 598 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 NFATC3Q12968 1075 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MTMR2Q13614 643 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 SKA3Q8IX90 412 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF419Q96HQ0 510 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF641Q96N77 438 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MAGIXQ9H6Y5 334 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 PIN4Q9Y237 131 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TYRP14679 529 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ACTC1P68032 377 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ACTA1P68133 377 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 PTCHD3Q3KNS1 767 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 FAM35AQ86V20 835 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 PLD6Q8N2A8 252 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 TAS1R2Q8TE23 839 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 PLATP00750 562 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CD247P20963 164 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ALG10Q5BKT4 473 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 C11orf96Q7Z7L8 435 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MALSU1Q96EH3 234 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CNTNAP3BQ96NU0 1288 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF700Q9H0M5 742 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 POLR2J3Q9H1A7 115 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CNTN6Q9UQ52 1028 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 NR2E3Q9Y5X4 410 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 RBMXL2O75526 392 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 ITGB1P05556 798 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MAGP20916 626 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MC2RQ01718 297 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 CD47Q08722 323 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 FASTKD3Q14CZ7 662 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 C3orf58Q8NDZ4 430 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 NSUN4Q96CB9 384 aaKnown RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 LIN37Q96GY3 246 aaPredicted RBP12.4□□□□□ -0.42
COL6A3-203ENST00000353578 VWA7Q9Y334 891 aa12.4□□□□□ -0.42
COL6A3-203ENST00000353578 MST1RQ04912 1400 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 AGAP14A8MT82 685 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 C19orf81C9J6K1 198 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 SLC33A1O00400 549 aaPredicted RBP12.4□□□□□ -0.43
COL6A3-203ENST00000353578 CYB5AP00167 134 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 POU4F2Q12837 409 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 NTRK3Q16288 839 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 DET1Q7L5Y6 550 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 APTXQ7Z2E3 356 aaKnown RBP12.4□□□□□ -0.43
COL6A3-203ENST00000353578 GALNT5Q7Z7M9 940 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 APOBEC3FQ8IUX4 373 aaKnown RBP12.4□□□□□ -0.43
COL6A3-203ENST00000353578 SLC13A3Q8WWT9 602 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 PRICKLE1Q96MT3 831 aaPredicted RBP12.4□□□□□ -0.43
COL6A3-203ENST00000353578 SULT4A1Q9BR01 284 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 ZDHHC7Q9NXF8 308 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 PCM1Q15154 2024 aa12.4□□□□□ -0.43
COL6A3-203ENST00000353578 A0A0G2JMP0 313 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 ARHGAP11AQ6P4F7 1023 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 TMEM86AQ8N2M4 240 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 OR4M2Q8NGB6 313 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 CPB2Q96IY4 423 aa12.39□□□□□ -0.43
COL6A3-203ENST00000353578 RNF157Q96PX1 679 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms