RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 CNOT11Q9UKZ1 510 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GOT1P17174 413 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TXNL4AP83876 142 aaKnown RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 FADDQ13158 208 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 KIAA1614Q5VZ46 1190 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 MED27Q6P2C8 311 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 UBQLNLQ8IYU4 475 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 SGCDQ92629 289 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 DEFB129Q9H1M3 183 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TM9SF3Q9HD45 589 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 A0A1B0GVI7 797 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GADD45GO95257 159 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GKN3PP0CG01 181 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 TOMM20Q15388 145 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 ACSBG2Q5FVE4 666 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 GHDCQ8N2G8 530 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 EFCAB3Q8N7B9 438 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 POTEKPQ9BYX7 375 aa13.09□□□□□ -0.31
COL6A3-202ENST00000347401 RPH3AQ9Y2J0 694 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-202ENST00000347401 C2orf71A6NGG8 1288 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 FBP2O00757 339 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 CXCL11O14625 94 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 SLC7A4O43246 635 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 IL1R1P14778 569 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 CYCSP99999 105 aaKnown RBP13.08□□□□□ -0.31
COL6A3-202ENST00000347401 CLCQ05315 142 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 CD47Q08722 323 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 GALNTL5Q7Z4T8 443 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 GID4Q8IVV7 300 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 PHC2Q8IXK0 858 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 SNX10Q9Y5X0 201 aa13.08□□□□□ -0.31
COL6A3-202ENST00000347401 TPRP12270 2363 aaKnown RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 TCRBV5S4A2TA0A5A2 114 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 DAPL1A0PJW8 107 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ELFN1P0C7U0 828 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 NSG1P42857 185 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 TGFB2P61812 414 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 SLC37A3Q8NCC5 494 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 HYLS1Q96M11 299 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 OMDQ99983 421 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 JCADQ9P266 1359 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CHD5Q8TDI0 1954 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 PGLSO95336 258 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CTSEP14091 401 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ZNF33AQ06730 810 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 OR2L2Q8NH16 312 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ISOC1Q96CN7 298 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 P2RY11Q96G91 374 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 FDXACB1Q9BRP7 624 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 SPATC1LQ9H0A9 340 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 GLOD4Q9HC38 313 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 FANCFQ9NPI8 374 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 DISC1C4P0D8 188 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 TBX10O75333 385 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 RECQL4O94761 1208 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 VTNP04004 478 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CRISP3P54108 245 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 C9orf64Q5T6V5 341 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 KANK2Q63ZY3 851 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 UBE2R2Q712K3 238 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 PAQR7Q86WK9 346 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CHST4Q8NCG5 386 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LRRC58Q96CX6 371 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CYTH4Q9UIA0 394 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ERVK-11Q9UQG0 969 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CCL15-CCL14A0A0B4J2E2 113 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 BCAS2O75934 225 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 NDST2P52849 883 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 CCL15Q16663 113 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 SH3D19Q5HYK7 790 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 FSTL4Q6MZW2 842 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LRTOMTQ8WZ04 291 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 TMEM106CQ9BVX2 250 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ABCB9Q9NP78 766 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 TAS2R10Q9NYW0 307 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LRRN3E7EW58 273 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 MSCO60682 206 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 RCBTB2O95199 551 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ADH1CP00326 375 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 INSRRP14616 1297 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 PBX3P40426 434 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 AIMP2Q13155 320 aaKnown RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 FNDC3BQ53EP0 1204 aaKnown RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LRRC57Q8N9N7 239 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LRRN3Q9H3W5 708 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 HACL1Q9UJ83 578 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 HSPB11Q9Y547 144 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 IFNA1P01562 189 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 PKMP14618 531 aaKnown RBP13.08□□□□□ -0.32
COL6A3-202ENST00000347401 SLC13A2Q13183 592 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 LCLAT1Q6UWP7 414 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 MON1BQ7L1V2 547 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 ZNF367Q7RTV3 350 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 GPR156Q8NFN8 814 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 SENP8Q96LD8 212 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 PHOX2BQ99453 314 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 NKIRAS2Q9NYR9 191 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 COPS7AQ9UBW8 275 aa13.08□□□□□ -0.32
COL6A3-202ENST00000347401 KCNU1A8MYU2 1149 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms