RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SPAG16Q8N0X2 631 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 DAW1Q8N136 415 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ANKFN1Q8N957 763 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MOAP1Q96BY2 351 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 PCED1BQ96HM7 432 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 NEDD4LQ96PU5 975 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 ZSCAN5AQ9BUG6 496 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 TRIM39Q9HCM9 518 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 MEMO1Q9Y316 297 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 TELO2Q9Y4R8 837 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 DGKBQ9Y6T7 804 aa10.11□□□□□ -0.79
CCDC88A-202ENST00000336838 LOC100130705A0A1B0GUX0 176 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ENDOD1O94919 500 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 OR5F1O95221 314 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 S100A6P06703 90 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 MAPK12P53778 367 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 VARS2Q5ST30 1063 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 RPL13AP3Q6NVV1 102 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 RASSF6Q6ZTQ3 369 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 TSGA13Q96PP4 275 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 DCSTAMPQ9H295 470 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 COPZ2Q9P299 210 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 A0A1W2PRG6 482 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 RFX3P48380 749 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CDH13P55290 713 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC9B1Q4ZJI4 515 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 GPR156Q8NFN8 814 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 Q9Y3F1 56 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ACOX3O15254 700 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 C22orf31O95567 290 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 HSD3B1P14060 373 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 KCNE1P15382 129 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 HSD3B2P26439 372 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CLCN4P51793 760 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CRISP3P54108 245 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 OR2B6P58173 313 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 TAS2R39P59534 338 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 NCBP2-AS2Q69YL0 99 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PLCZ1Q86YW0 608 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 STON2Q8WXE9 905 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 C1orf74Q96LT6 269 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 MAGED1Q9Y5V3 778 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 COL22A1Q8NFW1 1626 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 BTBD19C9JJ37 291 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ACSL4O60488 711 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 AP2A2O94973 939 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CST3P01034 146 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 TACSTD2P09758 323 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CD36P16671 472 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF3P17036 446 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CTPS1P17812 591 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 SMAD3P84022 425 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 RHAGQ02094 409 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 IRF5Q13568 498 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 GRIK5Q16478 980 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF423Q2M1K9 1284 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 SH3PXD2AQ5TCZ1 1133 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 TRMT10BQ6PF06 316 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF517Q6ZMY9 492 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 KLHL36Q8N4N3 616 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 KLHL6Q8WZ60 621 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 DDX1Q92499 740 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ADAMTSL3P82987 1691 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ATP6V1G1O75348 118 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CD48P09326 243 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 MAPK3P27361 379 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 GSTM4Q03013 218 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 MINDY1Q8N5J2 469 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 DUSP26Q9BV47 211 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 COMMD4Q9H0A8 199 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ENTPD6O75354 484 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PRKD3O94806 890 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 LRATO95237 230 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 SMSP52788 366 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF404Q494X3 552 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 OTOP3Q7RTS5 596 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 JAZF1Q86VZ6 243 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 OR4C6Q8NH72 309 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 EBF4Q9BQW3 602 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 B3GNT5Q9BYG0 378 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 APOBEC3GQ9HC16 384 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PHPT1Q9NRX4 125 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 FABP12A6NFH5 140 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 A8MT66 165 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PLOD2O00469 737 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PRAMEF12O95522 483 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CD2P06729 351 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ATG9BQ674R7 924 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 ZNF367Q7RTV3 350 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 CDCA5Q96FF9 252 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 PGLYRP2Q96PD5 576 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 TRIM36Q9NQ86 728 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 GTF2IRD1Q9UHL9 959 aa10.1□□□□□ -0.79
CCDC88A-202ENST00000336838 XKRYO14609 159 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 PDPK1O15530 556 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 TNNI3P19429 210 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 VN1R5Q7Z5H4 357 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 GSDMCQ9BYG8 508 aa10.09□□□□□ -0.79
CCDC88A-202ENST00000336838 SLC2A11Q9BYW1 496 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms