RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 REM2Q8IYK8 340 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 CD99L2Q8TCZ2 262 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 STYXQ8WUJ0 223 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CLP1Q92989 425 aaKnown RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 FBXL20Q96IG2 436 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 C8orf48Q96LL4 319 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CEP295NLQ96MC4 621 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 MMP27Q9H306 513 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZFYVE1Q9HBF4 777 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 DNAJC11Q9NVH1 559 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZNF358Q9NW07 568 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 FBXO9Q9UK97 447 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 SNX10Q9Y5X0 201 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 OR4F21O95013 312 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SPATA31D3P0C874 917 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CCR10P46092 362 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 STT3AP46977 705 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CCR4P51679 360 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 NDST2P52849 883 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 MYBPC3Q14896 1274 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 RAB39AQ14964 217 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 IFI44LQ53G44 452 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 KLHL22Q53GT1 634 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ADNP2Q6IQ32 1131 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SPATA31D4Q6ZUB0 917 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZNF431Q8TF32 576 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 ART5Q96L15 291 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 KCTD7Q96MP8 289 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 LPIN3Q9BQK8 851 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 GTPBP2Q9BX10 602 aaKnown RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS39-201ENST00000318006 PCDHB1Q9Y5F3 818 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 LOC100130705A0A1B0GUX0 176 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 FAM159BA6NKW6 160 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 STK16O75716 305 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 MT-CYBP00156 380 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 SULT2A1Q06520 285 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 RIPPLY1Q0D2K3 151 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 KLF1Q13351 362 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 MPPE1Q53F39 396 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZNF730Q6ZMV8 503 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TMIEQ8NEW7 156 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SLC7A6OSQ96CW6 309 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 AURKBQ96GD4 344 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 GPR21Q99679 349 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 MAGEH1Q9H213 219 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZBTB26Q9HCK0 441 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 METTL21EPA6NDL7 271 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 FAM47E-STBD1D6RA91 191 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TYROBPO43914 113 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 IL1BP01584 269 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CDH5P33151 784 aaPredicted RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 MANFP55145 182 aaKnown RBP11.3□□□□□ -0.6
VPS39-201ENST00000318006 TLR1Q15399 786 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 CLEC20AQ6ZU45 233 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TREML1Q86YW5 311 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 NPAS4Q8IUM7 802 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SLC37A3Q8NCC5 494 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 NTAN1Q96AB6 310 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 ZFP3Q96NJ6 502 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 C11orf16Q9NQ32 467 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 UPB1Q9UBR1 384 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 TRPS1Q9UHF7 1281 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 SLC45A1Q9Y2W3 748 aa11.3□□□□□ -0.6
VPS39-201ENST00000318006 A0A1B0GVM2 712 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TCAF2A6NFQ2 919 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 DENRO43583 198 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 CLDN9O95484 217 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 FGBP02675 491 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 GSTT2BP0CG30 244 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 GSK3BP49841 420 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ERVK-8P63133 956 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ZNF267Q14586 743 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 ZNF460Q14592 562 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 PTGES3Q15185 160 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 FAM174BQ3ZCQ3 159 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 GARNL3Q5VVW2 1013 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ESRP1Q6NXG1 681 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 RELL1Q8IUW5 271 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 LIX1Q8N485 282 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 DCBLD1Q8N8Z6 715 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 AKAP1Q92667 903 aaKnown RBP eCLIP11.29□□□□□ -0.61e-6■□□□□ 10.4
VPS39-201ENST00000318006 COL26A1Q96A83 441 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 FUBP3Q96I24 572 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS39-201ENST00000318006 BCO2Q9BYV7 579 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CXorf49A8MYA2 514 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 H3BNH8 94 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CA12O43570 354 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 DNAJB5O75953 348 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 DNTTP04053 509 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 POU2F1P14859 743 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TLX1P31314 330 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 DNAJA1P31689 397 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 ACSL1P33121 698 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 RABGGTBP53611 331 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TAF13Q15543 124 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CCL14Q16627 93 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TBRG1Q3YBR2 411 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 IDNKQ5T6J7 187 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CES5AQ6NT32 575 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms