RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CACNG1Q06432 222 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 SPATC1Q76KD6 591 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 YIPF4Q9BSR8 244 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RAI2Q9Y5P3 530 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 EML1O00423 815 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 LIASO43766 372 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF8P17098 575 aaPredicted RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 CELF3Q5SZQ8 465 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 Q8N9G6 341 aaPredicted RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TRMT10AQ8TBZ6 339 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TMED9Q9BVK6 235 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ARHGEF4Q9NR80 690 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 A8MUI8 341 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 C7orf61Q8IZ16 206 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 AGAP11Q8TF27 550 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ORAI3Q9BRQ5 295 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 NOP16Q9Y3C1 178 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ILVBLA1L0T0 632 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PRNPP04156 253 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RFX5P48382 616 aaPredicted RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RBM48Q5RL73 367 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PGM2L1Q6PCE3 622 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF34Q8IZ26 560 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 THEM6Q8WUY1 208 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 LACRTQ9GZZ8 138 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 METTL7AQ9H8H3 244 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 MRM3Q9HC36 420 aaKnown RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 CTPS2Q9NRF8 586 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 CLRN1P58418 232 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 SLC26A5P58743 744 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TGFB2P61812 414 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 MLIPQ5VWP3 458 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 VTCN1Q7Z7D3 282 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 KIAA0895Q8NCT3 520 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TUBA8Q9NY65 449 aaPredicted RBP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 TVP23BQ9NYZ1 205 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ITGA10O75578 1167 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PLGLAQ15195 96 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.2□□□□□ -0.62
PTPN4-201ENST00000263708 LRRC73Q5JTD7 316 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 GATAD2BQ8WXI9 593 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ARNTL2Q8WYA1 636 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 KLHL6Q8WZ60 621 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 FZD3Q9NPG1 666 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PCDHB1Q9Y5F3 818 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 MYH15Q9Y2K3 1946 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 GABRB2P47870 512 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 RARRES1P49788 294 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 GPR68Q15743 365 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 NKAPLQ5M9Q1 402 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 SYCE2Q6PIF2 218 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 ASB18Q6ZVZ8 466 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 SLC16A9Q7RTY1 509 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 PAQR7Q86WK9 346 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 DEFB118Q96PH6 123 aa11.2□□□□□ -0.62
PTPN4-201ENST00000263708 CCINQ13939 588 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PCBP2Q15366 365 aaKnown RBP eCLIP11.19□□□□□ -0.623e-6■■■■□ 22.2
PTPN4-201ENST00000263708 CLEC6AQ6EIG7 209 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 SALL1Q9NSC2 1324 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 TVP23AA6NH52 213 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 ZNF41P51814 821 aaPredicted RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 BST1Q10588 318 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 MTFR2Q6P444 385 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 OTOP2Q7RTS6 562 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 TRMT2AQ8IZ69 625 aaKnown RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 MND1Q9BWT6 205 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 TMEM165Q9HC07 324 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 ZDHHC4Q9NPG8 344 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 TIMM22Q9Y584 194 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 EME2A4GXA9 379 aaPredicted RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 MPSTP25325 297 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 HSPA7P48741 367 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 BLKP51451 505 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 DNM1P34Q6PK57 102 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 MKL1Q969V6 931 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 NDC1Q9BTX1 674 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 EVLQ9UI08 416 aaPredicted RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 RAB26Q9ULW5 256 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 ZC3H13Q5T200 1668 aaKnown RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 CXCL11O14625 94 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PRAMEF1O95521 474 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 HK1P19367 917 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 CASP6P55212 293 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 HEPACAMQ14CZ8 416 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 FCRL2Q96LA5 508 aaPredicted RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 TREX2Q9BQ50 279 aaPredicted RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 JCADQ9P266 1359 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 CTDNEP1O95476 244 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 HOXB6P17509 224 aaKnown RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 CCR3P51677 355 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 KLHL22Q53GT1 634 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 BCORL1Q5H9F3 1711 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PPP2R2DQ66LE6 453 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 UNC93AQ86WB7 457 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PDCD2LQ9BRP1 358 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PCBD2Q9H0N5 130 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 GNG8Q9UK08 70 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PRPF19Q9UMS4 504 aaKnown RBP11.19□□□□□ -0.62
PTPN4-201ENST00000263708 PCDHGB2Q9Y5G2 931 aa11.19□□□□□ -0.62
PTPN4-201ENST00000263708 MYO18AQ92614 2054 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms