RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PDLIM1O00151 329 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 BTN3A3O00478 584 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 BCAS2O75934 225 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 RPL17P18621 184 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 S100A1P23297 94 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 VARSP26640 1264 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 ITPKBP27987 946 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 ALDH4A1P30038 563 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 MNDAP41218 407 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 AP1S2P56377 157 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 GJA9P57773 515 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 CYP4F8P98187 520 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 EMC10Q5UCC4 262 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 RNASE11Q8TAA1 199 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 PIGXQ8TBF5 258 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 DNASE1L2Q92874 299 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 ZBED6CLQ96FA7 236 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 ZNF514Q96K75 400 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 PHF12Q96QT6 1004 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 PEBP4Q96S96 227 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 MIPEPQ99797 713 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 SLC39A3Q9BRY0 314 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 ZNF142P52746 1687 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 A0A1W2PP18 115 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 PGLSO95336 258 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 MYCLP1P12525 358 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 AZGP1P25311 298 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 NFKB2Q00653 900 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 HSPB3Q12988 150 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 MPP2Q14168 576 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 RBM20Q5T481 1227 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 PRSS55Q6UWB4 352 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 USP30Q70CQ3 517 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 TMC8Q8IU68 726 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 PEX5LQ8IYB4 626 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 PKP2Q99959 881 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 NKIRAS2Q9NYR9 191 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 SLC2A6Q9UGQ3 507 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 MRTO4Q9UKD2 239 aaKnown RBP10.56□□□□□ -0.72
CD44-201ENST00000263398 ERVW-1Q9UQF0 538 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 COLEC10Q9Y6Z7 277 aa10.56□□□□□ -0.72
CD44-201ENST00000263398 RIIAD1A6NNX1 92 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 MCIDASD6RGH6 385 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 OR1F1O43749 312 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 APODP05090 189 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CMPK1P30085 196 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PDE12Q6L8Q7 609 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 IGDCC3Q8IVU1 814 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PIK3R3Q92569 461 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 B3GALT6Q96L58 329 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CDK15Q96Q40 435 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 EFCAB11Q9BUY7 163 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 NECTIN3Q9NQS3 549 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 GIN1Q9NXP7 522 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 VPS29Q9UBQ0 182 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 TMA7Q9Y2S6 64 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 E7ESA3 106 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CLIC1O00299 241 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SLC22A1O15245 554 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CCL16O15467 120 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 RFPL1O75677 317 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 UGT1A6P19224 532 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 UGT1A1P22309 533 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 UGT1A4P22310 534 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 UGT1A3P35503 534 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CCNFP41002 786 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PCDH1Q08174 1060 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 TNFAIP8L3Q5GJ75 292 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 FAM182AQ5T1J6 154 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CAND1Q86VP6 1230 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 GALNT13Q8IUC8 556 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SAMD14Q8IZD0 417 aaPredicted RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 ART5Q96L15 291 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SLC32A1Q9H598 525 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 ZDHHC3Q9NYG2 299 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PSAT1Q9Y617 370 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 HS3ST4Q9Y661 456 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 A0A0U1RQF3 1178 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 LCHNA4D1U4 455 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 J3KR12 359 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 HAS3O00219 553 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 NRP1O14786 923 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 HCN1O60741 890 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PRKD3O94806 890 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 SNX4O95219 450 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 VIPP01282 170 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CYP11A1P05108 521 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 CAP1Q01518 475 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 ENDOVQ8N8Q3 282 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 TMCO6Q96DC7 493 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PRICKLE1Q96MT3 831 aaPredicted RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 POLR2J3Q9H1A7 115 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 VRTNQ9H8Y1 702 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 TRPV5Q9NQA5 729 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 ITM2CQ9NQX7 267 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PTBP2Q9UKA9 531 aaKnown RBP10.55□□□□□ -0.72
CD44-201ENST00000263398 IKZF2Q9UKS7 526 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 PCDH7O60245 1069 aa10.55□□□□□ -0.72
CD44-201ENST00000263398 RNASEH2AO75792 299 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms