RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 AMBRA1Q9C0C7 1298 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ACTL8Q9H568 366 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ARL15Q9NXU5 204 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 NUDT4Q9NZJ9 180 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 UNCXA6NJT0 531 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 H0YAE9 185 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 OR7A17O14581 309 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ESR1P03372 595 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 EPB42P16452 691 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 PTGER3P43115 390 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CASP9P55211 416 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 VBP1P61758 197 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 FAM189BP81408 668 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CES5AQ6NT32 575 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ZCCHC8Q6NZY4 707 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 ZNF621Q6ZSS3 439 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 NECAB2Q7Z6G3 386 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 NETO1Q8TDF5 533 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 KCNJ9Q92806 393 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TANKQ92844 425 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TPD52L3Q96J77 140 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ELOVL6Q9H5J4 265 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 RUBCNLQ9H714 662 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 PRDM8Q9NQV8 689 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ZNF229Q9UJW7 825 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TMED5Q9Y3A6 229 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ZNF236Q9UL36 1845 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 BCKDKO14874 412 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TBL1XO60907 577 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 NDUFS2O75306 463 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 BCAS1O75363 584 aaPredicted RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 CREG1O75629 220 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 OXSR1O95747 527 aaPredicted RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 GLUD1P00367 558 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 PFKLP17858 780 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 MLLT10P55197 1068 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 DNASE1L3Q13609 305 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CDH18Q13634 790 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CTU2Q2VPK5 515 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 RBM23Q86U06 439 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 GOLM1Q8NBJ4 401 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ABHD11Q8NFV4 315 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 LKAAEAR1Q8TD35 194 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TRIB2Q92519 343 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 APOLD1Q96LR9 279 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 TRIB3Q96RU7 358 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 CSF3RQ99062 836 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 RBM4BQ9BQ04 359 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 RBM4Q9BWF3 364 aaKnown RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 EBPLQ9BY08 206 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 C8orf4Q9NR00 106 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 POLE4Q9NR33 117 aa12.39□□□□□ -0.43
LIG1-201ENST00000263274 ARIH1Q9Y4X5 557 aaPredicted RBP12.39□□□□□ -0.43
LIG1-201ENST00000263274 SLC38A8A6NNN8 435 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 KDM1AO60341 852 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 CLDN7O95471 211 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 NTRK1P04629 796 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 OR1D2P34982 312 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 CDH4P55283 916 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 MGAT3Q09327 533 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PLD1Q13393 1074 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PON2Q15165 354 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 SKIV2LQ15477 1246 aaKnown RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 RTP2Q5QGT7 225 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 TMEM236Q5W0B7 351 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 TMEM179BQ7Z7N9 219 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 IGFN1Q86VF2 1251 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ZCCHC7Q8N3Z6 543 aaKnown RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 RNF175Q8N4F7 328 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ZNF540Q8NDQ6 660 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 CHDHQ8NE62 594 aaPredicted RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 TNKS2Q9H2K2 1166 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PRR35P0CG20 571 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 HTR1BP28222 390 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 CD300CQ08708 224 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 GRIK2Q13002 908 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 RAPSNQ13702 412 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 SPOUT1Q5T280 376 aaKnown RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 DOK6Q6PKX4 331 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 HORMAD1Q86X24 394 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 COLGALT2Q8IYK4 626 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 MICU2Q8IYU8 434 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 GTF2H4Q92759 462 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PEX13Q92968 403 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 MAGED4Q96JG8 741 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 INPP5KQ9BT40 448 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ERVK-18Q9QC07 812 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 DHRS7Q9Y394 339 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 Q9Y3F1 56 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PRSS21Q9Y6M0 314 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ZNF701M0R085 212 aaPredicted RBP12.38□□□□□ -0.43
LIG1-201ENST00000263274 UPK1AO00322 258 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 PER2O15055 1255 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 KDELR3O43731 214 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ADAM23O75077 832 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 CLDN11O75508 207 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 KLKB1P03952 638 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 C7P10643 843 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 ITGALP20701 1170 aa12.38□□□□□ -0.43
LIG1-201ENST00000263274 IGFBP5P24593 272 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms