RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 UBTD2Q8WUN7 234 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 NTMT1Q9BV86 223 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 LTB4R2Q9NPC1 389 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 C1orf109Q9NX04 203 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 ASIC5Q9NY37 505 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 WARS2Q9UGM6 360 aaKnown RBP18.33■□□□□ 0.52
CPSF3-201ENST00000238112 VPS51Q9UID3 782 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 PSME2Q9UL46 239 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 TMEM88BA6NKF7 163 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 SCAMP3O14828 347 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 RETP07949 1114 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 HMGA1P17096 107 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 GGT5P36269 586 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 PON2Q15165 354 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 GTDC1Q4AE62 458 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 LYPLAL1Q5VWZ2 237 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 GPR149Q86SP6 731 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 DBF4BQ8NFT6 615 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 OR5K1Q8NHB7 308 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 SGCDQ92629 289 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 KLF16Q9BXK1 252 aaPredicted RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 GPN2Q9H9Y4 310 aaPredicted RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 DCAF13Q9NV06 445 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 CHCHD3Q9NX63 227 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 C2orf78A6NCI8 922 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 CBFA2T3O75081 653 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 CREG1O75629 220 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 ZBTB11O95625 1053 aaPredicted RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 NRIP1P48552 1158 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 PLA2G16P53816 162 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 TOP3AQ13472 1001 aaPredicted RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 ARHGEF7Q14155 803 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 ATG9BQ674R7 924 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 SLC8B1Q6J4K2 584 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 METTL2BQ6P1Q9 378 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 ZBTB46Q86UZ6 589 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 DNAJB8Q8NHS0 232 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 BCL7CQ8WUZ0 217 aaPredicted RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 MTFMTQ96DP5 389 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 FAM120BQ96EK7 910 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 MAGIXQ9H6Y5 334 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 KAT8Q9H7Z6 458 aaKnown RBP18.32■□□□□ 0.52
CPSF3-201ENST00000238112 IL26Q9NPH9 171 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 ORC6Q9Y5N6 252 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 SNX5Q9Y5X3 404 aa18.32■□□□□ 0.52
CPSF3-201ENST00000238112 TBKBP1A7MCY6 615 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 FAM220BPB1ANY3 271 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 STK16O75716 305 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 SERPINA1P01009 418 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 ZNF12P17014 697 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 CSKP41240 450 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 BMXP51813 675 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 RAB15P59190 212 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 VAC14Q08AM6 782 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 PPP1R8Q12972 351 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 PLD1Q13393 1074 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 CDH18Q13634 790 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 TTLL9Q3SXZ7 439 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 USP39Q53GS9 565 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 GPRC6AQ5T6X5 926 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 ZCCHC7Q8N3Z6 543 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 TMEM175Q9BSA9 504 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 PARVBQ9HBI1 364 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 PCDHB14Q9Y5E9 798 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 GLYATL1P3A0A0U1RQE8 302 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 LOC100130705A0A1B0GUX0 176 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 K7ERQ8 282 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 ERN1O75460 977 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 CLDN7O95471 211 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 KRT6AP02538 564 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 KRT6BP04259 564 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 BCKDHAP12694 445 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 DCTP40126 519 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 KRT6CP48668 564 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 BCL2L1Q07817 233 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 CD47Q08722 323 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 CTU2Q2VPK5 515 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 HOMEZQ8IX15 550 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 USP7Q93009 1102 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 COX4I2Q96KJ9 171 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 DGCR6LQ9BY27 220 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 MRPL9Q9BYD2 267 aaKnown RBP18.31■□□□□ 0.52
CPSF3-201ENST00000238112 SLC29A3Q9BZD2 475 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 RDH14Q9HBH5 336 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 MTRRQ9UBK8 725 aa18.31■□□□□ 0.52
CPSF3-201ENST00000238112 RECQL5O94762 991 aaPredicted RBP18.3■□□□□ 0.52
CPSF3-201ENST00000238112 TRBC1P01850 177 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 SELPP16109 830 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 ANKRD34AQ69YU3 496 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 GTF2IRD2BQ6EKJ0 949 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 MACC1Q6ZN28 852 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 MBOAT1Q6ZNC8 495 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 GTF2IRD2Q86UP8 949 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 NPAS4Q8IUM7 802 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 TMEM132CQ8N3T6 1108 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 HJURPQ8NCD3 748 aaPredicted RBP18.3■□□□□ 0.52
CPSF3-201ENST00000238112 POP5Q969H6 163 aaKnown RBP18.3■□□□□ 0.52
CPSF3-201ENST00000238112 HTATIP2Q9BUP3 242 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 RAD21L1Q9H4I0 556 aa18.3■□□□□ 0.52
CPSF3-201ENST00000238112 RMND5AQ9H871 391 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms