RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PABPN1LA6NDY0 278 aaKnown RBP17.98■□□□□ 0.47
CLN3-254ENST00000637050 PRR19A6NJB7 356 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 K7ESF4 209 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 HDAC3O15379 428 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 MLYCDO95822 493 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 MAP4P27816 1152 aaKnown RBP17.98■□□□□ 0.47
CLN3-254ENST00000637050 MAGEA9P43362 315 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 HSPA7P48741 367 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 HNMTP50135 292 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 SIGLEC14Q08ET2 396 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 TTC23LQ6PF05 361 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 CHST15Q7LFX5 561 aaPredicted RBP17.98■□□□□ 0.47
CLN3-254ENST00000637050 PDZD3Q86UT5 571 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 FBXL8Q96CD0 374 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 UHRF1Q96T88 793 aaPredicted RBP17.98■□□□□ 0.47
CLN3-254ENST00000637050 ORAI3Q9BRQ5 295 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 WWP1Q9H0M0 922 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 PCED1AQ9H1Q7 454 aa17.98■□□□□ 0.47
CLN3-254ENST00000637050 SEMA4BQ9NPR2 832 aaPredicted RBP17.98■□□□□ 0.47
CLN3-254ENST00000637050 TMEM233B4DJY2 109 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 TNFRSF10CO14798 259 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 C1orf105O95561 183 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 FGF4P08620 206 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 ACP5P13686 325 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 HTR1BP28222 390 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 ZXDCQ2QGD7 858 aaPredicted RBP17.97■□□□□ 0.47
CLN3-254ENST00000637050 CWF19L1Q69YN2 538 aaKnown RBP17.97■□□□□ 0.47
CLN3-254ENST00000637050 ENPP7Q6UWV6 458 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 UNC5DQ6UXZ4 953 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 AGAP11Q8TF27 550 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 OR1E3Q8WZA6 343 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 FAR2Q96K12 515 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 HGH1Q9BTY7 390 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 ZDHHC5Q9C0B5 715 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 MID1IP1Q9NPA3 183 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 KLC4Q9NSK0 619 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 MOSPD1Q9UJG1 213 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 ACSL5Q9ULC5 683 aa17.97■□□□□ 0.47
CLN3-254ENST00000637050 NDUFS2O75306 463 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 BDKRB1P46663 353 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 RABIFP47224 123 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 IDH3AP50213 366 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 IFT88Q13099 833 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GTF2H2Q13888 395 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GTF2H2CQ6P1K8 395 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 EPGNQ6UW88 154 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 Q6ZSR6 202 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GOLGA7Q7Z5G4 137 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 SPDYE1Q8NFV5 336 aaPredicted RBP17.96■□□□□ 0.47
CLN3-254ENST00000637050 CADM4Q8NFZ8 388 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 MAPK15Q8TD08 544 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 CCDC138Q96M89 665 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 NECAB3Q96P71 396 aaPredicted RBP17.96■□□□□ 0.47
CLN3-254ENST00000637050 ZNF382Q96SR6 550 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 EBF4Q9BQW3 602 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 OPTCQ9UBM4 332 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 TRAF6Q9Y4K3 522 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 ANKRD12Q6UB98 2062 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 A0A1B0GTL3 188 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 CCT8L1PA6NM43 557 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 METTL12A8MUP2 240 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 K7EPI3 171 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 CCNT2O60583 730 aaKnown RBP17.96■□□□□ 0.47
CLN3-254ENST00000637050 STK16O75716 305 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 DCTN3O75935 186 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GDF5P43026 501 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GNPDA1P46926 289 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 SLC6A12P48065 614 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 THOP1P52888 689 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 CCSMST1Q4G0I0 132 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 VWA5B1Q5TIE3 1220 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 TRPM8Q7Z2W7 1104 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 AFAP1L2Q8N4X5 818 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 OR13H1Q8NG92 308 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 STON2Q8WXE9 905 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 EDAQ92838 391 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 PDXPQ96GD0 296 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 OR2M4Q96R27 311 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 CARS2Q9HA77 564 aaKnown RBP17.96■□□□□ 0.47
CLN3-254ENST00000637050 HEY2Q9UBP5 337 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 GPSM3Q9Y4H4 160 aa17.96■□□□□ 0.47
CLN3-254ENST00000637050 KRT87PA6NCN2 255 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 AXIN1O15169 862 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 PI15O43692 258 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 ESRRBO95718 433 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 PDGFBP01127 241 aaPredicted RBP17.95■□□□□ 0.46
CLN3-254ENST00000637050 PKNOX1P55347 436 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 TUBB3Q13509 450 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 UGT3A2Q3SY77 523 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 CAPRIN2Q6IMN6 1127 aaKnown RBP17.95■□□□□ 0.46
CLN3-254ENST00000637050 LRRC70Q7Z2Q7 622 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 SYVN1Q86TM6 617 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 CLYBLQ8N0X4 340 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 TEX9Q8N6V9 391 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 FAM174AQ8TBP5 190 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 ATL1Q8WXF7 558 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 PKP4Q99569 1192 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 SLC32A1Q9H598 525 aa17.95■□□□□ 0.46
CLN3-254ENST00000637050 NOL11Q9H8H0 719 aaKnown RBP17.95■□□□□ 0.46
CLN3-254ENST00000637050 GPR27Q9NS67 375 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms