RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 IGHV1OR21-1A0A087WYE8 117 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 EXOC1LA0A1B0GW35 172 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 POC1B-GALNT4F8VUJ3 575 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 DUX1O43812 170 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 FAM155BO75949 473 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 MPC1LP0DKB6 136 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 AMD1P17707 334 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 MSH2P43246 934 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 TAS2R39P59534 338 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 TIAL1Q01085 375 aaKnown RBP eCLIP18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 SLC29A2Q14542 456 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 USP10Q14694 798 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 CLPPQ16740 277 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 N4BP2L1Q5TBK1 243 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 KLHL35Q6PF15 583 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 PAQR3Q6TCH7 311 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 OR5AR1Q8NGP9 310 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 OR5K2Q8NHB8 316 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 DPYSL5Q9BPU6 564 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 CCDC77Q9BR77 488 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 TBC1D10AQ9BXI6 508 aa18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 TDRKHQ9Y2W6 561 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-216ENST00000626660 TCEA3O75764 348 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 UBXN7O94888 489 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 PROS1P07225 676 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 ITGA2BP08514 1039 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 CCNFP41002 786 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 SERPINB9P50453 376 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 IL2P60568 153 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 INSM1Q01101 510 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 PRKG2Q13237 762 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 MAP9Q49MG5 647 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 RBM44Q6ZP01 1051 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 DCUN1D3Q8IWE4 304 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 MYO1HQ8N1T3 1032 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 MAGEC3Q8TD91 643 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 AENQ8WTP8 325 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 SLC44A1Q8WWI5 657 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 LCN9Q8WX39 176 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 LINGO1Q96FE5 620 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 PAFAH2Q99487 392 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 POPDC3Q9HBV1 291 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 SYTL2Q9HCH5 934 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 RAB21Q9UL25 225 aa18.6■□□□□ 0.57
SQSTM1-216ENST00000626660 A0A1W2PQM1 296 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 NTN3O00634 580 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 CPNE6O95741 557 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 CATP04040 527 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 STMN1P16949 149 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 CD1CP29017 333 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 SQSTM1Q13501 440 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 HES3Q5TGS1 186 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 NKAIN2Q5VXU1 208 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 PIWIL4Q7Z3Z4 852 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 TMPRSS12Q86WS5 348 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 GALNT15Q8N3T1 639 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 NKAPQ8N5F7 415 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 OR52E1Q8NGJ3 308 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 EEF1AKMT1Q8WVE0 214 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 JPH3Q8WXH2 748 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 TFB2MQ9H5Q4 396 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 GPAMQ9HCL2 828 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 RUVBL2Q9Y230 463 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 NFS1Q9Y697 457 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 NCOR2Q9Y618 2525 aa18.59■□□□□ 0.57
SQSTM1-216ENST00000626660 ANKRD12Q6UB98 2062 aa18.58■□□□□ 0.57
SQSTM1-216ENST00000626660 FAM221BA6H8Z2 402 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 D6RAR5 112 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 KRT38O76015 456 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 MATN4O95460 622 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 C1orf105O95561 183 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 MT-CO3P00414 261 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 ADRB1P08588 477 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 TYRP1P17643 537 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 NAA30Q147X3 362 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 USP53Q70EK8 1073 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB44Q7Z6P3 723 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 CHCHD4Q8N4Q1 142 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB42Q8N4Z0 105 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 NCSTNQ92542 709 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 CAVIN3Q969G5 261 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 RAD51AP1Q96B01 352 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 DEPDC7Q96QD5 511 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 EPB41L4BQ9H329 900 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 SRMSQ9H3Y6 488 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 CAB39LQ9H9S4 337 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 ATXN7L1Q9ULK2 861 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 CLCA2Q9UQC9 943 aa18.58■□□□□ 0.56
SQSTM1-216ENST00000626660 PTPRBP23467 1997 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 PSIP1O75475 530 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 JUPP14923 745 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 ZNF37AP17032 561 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CNTFP26441 200 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 MAP4P27816 1152 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CRABP2P29373 138 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 SHMT2P34897 504 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 BDKRB1P46663 353 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 CAPZBP47756 277 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 RAB10P61026 200 aa18.57■□□□□ 0.56
SQSTM1-216ENST00000626660 FOXC1Q12948 553 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms