RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DNTTP04053 509 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 IDSP22304 550 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 IFI44LQ53G44 452 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 PIK3R6Q5UE93 754 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 AGMOQ6ZNB7 445 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 PDPRQ8NCN5 879 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 SRFBP1Q8NEF9 429 aaKnown RBP13.77□□□□□ -0.2
CPSF1-212ENST00000616140 BRI3BPQ8WY22 251 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 C11orf24Q96F05 449 aaPredicted RBP13.77□□□□□ -0.2
CPSF1-212ENST00000616140 CTPS2Q9NRF8 586 aa13.77□□□□□ -0.2
CPSF1-212ENST00000616140 ALPIP09923 528 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 KCNE1P15382 129 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 PLA2G16P53816 162 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 RFTN1Q14699 578 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 HEPACAMQ14CZ8 416 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 TAF13Q15543 124 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 SNX20Q7Z614 316 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 TRPV3Q8NET8 790 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 SMG7Q92540 1137 aaKnown RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 FIZ1Q96SL8 496 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 BRINP2Q9C0B6 783 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 ABCB8Q9NUT2 735 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 GIMAP2Q9UG22 337 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 LRRC42Q9Y546 428 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 BAZ2AQ9UIF9 1905 aaKnown RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 ERN1O75460 977 aaKnown RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 CCR10P46092 362 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 DPY19L1Q2PZI1 675 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 LYSMD3Q7Z3D4 306 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 FAM98AQ8NCA5 519 aaKnown RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 ZMIZ2Q8NF64 920 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 ACDQ96AP0 544 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 OXCT2Q9BYC2 517 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-212ENST00000616140 USP29Q9HBJ7 922 aa13.77□□□□□ -0.21
CPSF1-212ENST00000616140 MYH8P13535 1937 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 FKTNO75072 461 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 NME6O75414 186 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 RNASEH2AO75792 299 aaKnown RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ITPKBP27987 946 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 RYKP34925 604 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PITX1P78337 314 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TRIM32Q13049 653 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SYT16Q17RD7 645 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 RABL3Q5HYI8 236 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 FAM92BQ6ZTR7 304 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 NANOGNBQ7Z5D8 188 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SKA1Q96BD8 255 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 OSER1Q9NX31 292 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 A0A0U1RQF3 1178 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 OR1F1O43749 312 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TPST2O60704 377 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 MTX2O75431 263 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ACLYP53396 1101 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 MOGSQ13724 837 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 GPR33Q49SQ1 333 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TNFAIP8L2Q6P589 184 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 RTL4Q6ZR62 310 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 OR5K1Q8NHB7 308 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TOP1MTQ969P6 601 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SUSD3Q96L08 255 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 KIFC1Q9BW19 673 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ING3Q9NXR8 418 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SAGE2PA6NJ88 616 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 IFNGP01579 166 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ALDOAP04075 364 aaKnown RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PCSK2P16519 638 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 KELP23276 732 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 CSKP41240 450 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 NFKB2Q00653 900 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SFT2D3Q587I9 215 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 LAPTM4BQ86VI4 370 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 WDTC1Q8N5D0 677 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 C8orf48Q96LL4 319 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ZNF599Q96NL3 588 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 ING4Q9UNL4 249 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PRKAB1Q9Y478 270 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 NUMA1Q14980 2115 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 H3BSA7 217 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SLC30A4O14863 429 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 HCN1O60741 890 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SLC25A12O75746 678 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 GADD45GO95257 159 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 C9P02748 559 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 C8AP07357 584 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 FGF3P11487 239 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 GDF5P43026 501 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PSMD8P48556 350 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 HKDC1Q2TB90 917 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 LIN54Q6MZP7 749 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PSRC1Q6PGN9 363 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TMPRSS11AQ6ZMR5 421 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 FLCNQ8NFG4 579 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 DNASE1L2Q92874 299 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 TMEM74Q96NL1 305 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 PHF12Q96QT6 1004 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 MIR1-1HGQ9H1L0 117 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 SMOC2Q9H3U7 446 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 IFT172Q9UG01 1749 aa13.76□□□□□ -0.21
CPSF1-212ENST00000616140 FAM92AA1XBS5 289 aa13.75□□□□□ -0.21
CPSF1-212ENST00000616140 HAS3O00219 553 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms