RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TCTN2Q96GX1 697 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 CDKN2AIPNLQ96HQ2 116 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 TRAPPC9Q96Q05 1148 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 APOL2Q9BQE5 337 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 TLR10Q9BXR5 811 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 FRMD8P1Q9BZ68 369 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-211ENST00000597968 SLC7A5P2Q9GIP4 190 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 PCMTD2Q9NV79 361 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 C5AR2Q9P296 337 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 AMFRQ9UKV5 643 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 REXO2Q9Y3B8 237 aaKnown RBP13.2□□□□□ -0.3
TRIM28-211ENST00000597968 FLNCQ14315 2725 aa13.2□□□□□ -0.3
TRIM28-211ENST00000597968 MROH6A6NGR9 719 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 TTLL8A6PVC2 850 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 TMEM150CB9EJG8 249 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 K7EM74 188 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 BTN3A3O00478 584 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 BTN3A1O00481 513 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 TMEM63AO94886 807 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 GAS8O95995 478 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 PTMAP06454 111 aaKnown RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 PPARGP37231 505 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 KLF1Q13351 362 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 IL10RAQ13651 578 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 NCF4Q15080 339 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 ZRANB3Q5FWF4 1079 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 SPESP1Q6UW49 350 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 RAB43Q86YS6 212 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 ADGRF3Q8IZF5 1079 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 LILRA3Q8N6C8 439 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 ENDOVQ8N8Q3 282 aaKnown RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 DNAJC1Q96KC8 554 aaKnown RBP13.19□□□□□ -0.3
TRIM28-211ENST00000597968 TRIM55Q9BYV6 548 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 LACRTQ9GZZ8 138 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 FAM8A1Q9UBU6 413 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 SRPK3Q9UPE1 567 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 PLAAQ9Y263 795 aa13.19□□□□□ -0.3
TRIM28-211ENST00000597968 PTPN13Q12923 2485 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ARGFXA6NJG6 315 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 DNAJB5O75953 348 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 SORBS2O94875 1100 aaKnown RBP13.18□□□□□ -0.3
TRIM28-211ENST00000597968 CAPN1P07384 714 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 OR56A5P0C7T3 313 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ST6GAL1P15907 406 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 NR1D1P20393 614 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 RPS18P62269 152 aaKnown RBP13.18□□□□□ -0.3
TRIM28-211ENST00000597968 TMPRSS15P98073 1019 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ABRQ12979 859 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 OLIG2Q13516 323 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 SSPNQ14714 243 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 RHBDD2Q6NTF9 364 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 AADACL2Q6P093 401 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 TLDC1Q6P9B6 456 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 FAM198BQ6UWH4 519 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 TAS2R42Q7RTR8 314 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 PEX26Q7Z412 305 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ACRBPQ8NEB7 543 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 OR1L3Q8NH93 324 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 OR5K2Q8NHB8 316 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 SLC35B2Q8TB61 432 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 CPT1CQ8TCG5 803 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ALG3Q92685 438 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 N4BP2L2Q92802 583 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-211ENST00000597968 SGSM3Q96HU1 749 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 FER1L6-AS2Q96M78 137 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 PSMG3-AS1Q96PY0 264 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 RUFY1Q96T51 708 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 FAM118BQ9BPY3 351 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 TSSK1BQ9BXA7 367 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 CUEDC1Q9NWM3 386 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-211ENST00000597968 ACTR10Q9NZ32 417 aa13.18□□□□□ -0.3
TRIM28-211ENST00000597968 A0A0U1RQJ8 604 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 GRID2IPA4D2P6 1211 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 ZNF749O43361 778 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 FKBP9O95302 570 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 PDGFAP04085 211 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 RPN2P04844 631 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 MSNP26038 577 aaKnown RBP13.17□□□□□ -0.3
TRIM28-211ENST00000597968 ACADLP28330 430 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 PDHA2P29803 388 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 PTGIRP43119 386 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 CCL11P51671 97 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 MLLT10P55197 1068 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 KIF5AQ12840 1032 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 CDH17Q12864 832 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 KIR2DS3Q14952 304 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 DBN1Q16643 649 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 ZNF385CQ66K41 422 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-211ENST00000597968 CDHR3Q6ZTQ4 885 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 NLRP9Q7RTR0 991 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 CLDN19Q8N6F1 224 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 C19orf47Q8N9M1 422 aaKnown RBP13.17□□□□□ -0.3
TRIM28-211ENST00000597968 FAM71DQ8N9W8 422 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 SLC22A18Q96BI1 424 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 RANBP9Q96S59 729 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 SMAD5Q99717 465 aaKnown RBP13.17□□□□□ -0.3
TRIM28-211ENST00000597968 AP1M1Q9BXS5 423 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 FAM96AQ9H5X1 160 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 ENAMQ9NRM1 1142 aa13.17□□□□□ -0.3
TRIM28-211ENST00000597968 SMARCAL1Q9NZC9 954 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms