RNA–Protein interactions for RNA: ENST00000592776.1

PTPN2-215, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 5

Gene PTPN2, Length 772 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-215	ENST00000592776	PIKFYVE	Q9Y2I7	2098 aa		21.33	■■□□□ 1
PTPN2-215	ENST00000592776	SLC5A10	A0PJK1	596 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	GOLGA6L6	A8MZA4	724 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	LIN7A	O14910	233 aa	Predicted RBP	21.32	■■□□□ 1
PTPN2-215	ENST00000592776	CPNE3	O75131	537 aa	Known RBP	21.32	■■□□□ 1
PTPN2-215	ENST00000592776	GAS8	O95995	478 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	GSDMD	P57764	484 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	FAM69B	Q5VUD6	431 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	PACS1	Q6VY07	963 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	OR6P1	Q8NGX9	317 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	LKAAEAR1	Q8TD35	194 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	TRAPPC9	Q96Q05	1148 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	CHST8	Q9H2A9	424 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	POLH	Q9Y253	713 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	ASF1A	Q9Y294	204 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	TCAF1	Q9Y4C2	921 aa		21.32	■■□□□ 1
PTPN2-215	ENST00000592776	TLN1	Q9Y490	2541 aa	Known RBP	21.32	■■□□□ 1
PTPN2-215	ENST00000592776	IQCF5	A8MTL0	148 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	TMEM150C	B9EJG8	249 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	ARHGAP6	O43182	974 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	FTH1	P02794	183 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	KCNJ1	P48048	391 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	CRADD	P78560	199 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	TLE1	Q04724	770 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	ACVR1	Q04771	509 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	LAMB3	Q13751	1172 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	ZNF789	Q5FWF6	425 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	PLEKHS1	Q5SXH7	462 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	AFTPH	Q6ULP2	937 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	UNC5A	Q6ZN44	842 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	CARF	Q8N187	725 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	CCDC89	Q8N998	374 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	LMNTD1	Q8N9Z9	388 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	OR4L1	Q8NH43	312 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	PITPNM3	Q9BZ71	974 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	CLMP	Q9H6B4	373 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	CHRAC1	Q9NRG0	131 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	SPHK1	Q9NYA1	384 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	PAK5	Q9P286	719 aa		21.31	■■□□□ 1
PTPN2-215	ENST00000592776	TDRKH	Q9Y2W6	561 aa	Known RBP	21.31	■■□□□ 1
PTPN2-215	ENST00000592776	C2orf74	A8MZ97	194 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	C21orf140	B9A014	251 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	HCRTR1	O43613	425 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	DNAJB5	O75953	348 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	GSTM1	P09488	218 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	OR56A5	P0C7T3	313 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	PTPN4	P29074	926 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	SESN2	P58004	480 aa	Predicted RBP	21.3	■■□□□ 1
PTPN2-215	ENST00000592776	GSTM4	Q03013	218 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	IL10RA	Q13651	578 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	CCNG2	Q16589	344 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	CDHR3	Q6ZTQ4	885 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	VRK3	Q8IV63	474 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	21.3	■■□□□ 1
PTPN2-215	ENST00000592776	TRIM55	Q9BYV6	548 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	EPN3	Q9H201	632 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	FAM60A	Q9NP50	221 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	MARCH4	Q9P2E8	410 aa	Predicted RBP	21.3	■■□□□ 1
PTPN2-215	ENST00000592776	CIDEB	Q9UHD4	219 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	FARSA	Q9Y285	508 aa	Known RBP	21.3	■■□□□ 1
PTPN2-215	ENST00000592776	TP53TG5	Q9Y2B4	290 aa		21.3	■■□□□ 1
PTPN2-215	ENST00000592776	MATN2	O00339	956 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	UGT2B7	P16662	529 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	CCR7	P32248	378 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	ZIC1	Q15915	447 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	SYTL3	Q4VX76	610 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	FASTKD1	Q53R41	847 aa	Known RBP	21.29	■■□□□ 1
PTPN2-215	ENST00000592776	FAM20C	Q8IXL6	584 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	KRT222	Q8N1A0	295 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	OR8K5	Q8NH50	307 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	OR2A14	Q96R47	310 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	LATS2	Q9NRM7	1088 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	TLK1	Q9UKI8	766 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	RIMKLB	Q9ULI2	386 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	MAN2B2	Q9Y2E5	1009 aa		21.29	■■□□□ 1
PTPN2-215	ENST00000592776	SPTB	P11277	2137 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	MEN1	O00255	615 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	QSOX1	O00391	747 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	FGG	P02679	453 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	CTSB	P07858	339 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	ATXN8OS	P0DMR3	200 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	CXCR5	P32302	372 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	CSRP3	P50461	194 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	TERF1	P54274	439 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	RPS15	P62841	145 aa	Known RBP	21.28	■■□□□ 1
PTPN2-215	ENST00000592776	PRAME	P78395	509 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	CHAF1B	Q13112	559 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	DEFB110	Q30KQ9	67 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	PTCHD3	Q3KNS1	767 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	LACTB2	Q53H82	288 aa	Predicted RBP	21.28	■■□□□ 1
PTPN2-215	ENST00000592776	LYPLAL1	Q5VWZ2	237 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	SPESP1	Q6UW49	350 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	ZNF517	Q6ZMY9	492 aa	Predicted RBP	21.28	■■□□□ 1
PTPN2-215	ENST00000592776	TBC1D21	Q8IYX1	336 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	DSEL	Q8IZU8	1212 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	PPHLN1	Q8NEY8	458 aa	Known RBP	21.28	■■□□□ 1
PTPN2-215	ENST00000592776	FLVCR1-AS1	Q8TAF5	88 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	CLIP3	Q96DZ5	547 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	GPR87	Q9BY21	358 aa		21.28	■■□□□ 1
PTPN2-215	ENST00000592776	PCMTD2	Q9NV79	361 aa		21.28	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms