RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CHDHQ8NE62 594 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZSWIM2Q8NEG5 633 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MCPH1Q8NEM0 835 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 BHLHE22Q8NFJ8 381 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 OR10T2Q8NGX3 314 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TBC1D15Q8TC07 691 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GANCQ8TET4 914 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 USP7Q93009 1102 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 C12orf43Q96C57 262 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 PLEKHA8Q96JA3 519 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZNF641Q96N77 438 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 EBNA1BP2Q99848 306 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 PKP2Q99959 881 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 FERMT1Q9BQL6 677 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 GPATCH1Q9BRR8 931 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 NAT9Q9BTE0 207 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 EFHD1Q9BUP0 239 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SLC13A1Q9BZW2 595 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TRIM15Q9C019 465 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 STRADBQ9C0K7 418 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 C20orf27Q9GZN8 174 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 NIF3L1Q9GZT8 377 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 IL22Q9GZX6 179 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 DRC3Q9H069 523 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 RPF2Q9H7B2 306 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 PLAC1Q9HBJ0 212 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MRM3Q9HC36 420 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 TCF7L2Q9NQB0 619 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SMYD2Q9NRG4 433 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 COPG2Q9UBF2 871 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 UXTQ9UBK9 157 aaPredicted RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 VTI1BQ9UEU0 232 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SARDHQ9UL12 918 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ERGIC3Q9Y282 383 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 TDRKHQ9Y2W6 561 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 RNF11Q9Y3C5 154 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 ZNF711Q9Y462 761 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 LOXL2Q9Y4K0 774 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 CPQQ9Y646 472 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 STYXL1Q9Y6J8 313 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 SLC30A1Q9Y6M5 507 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 U3KQA8 63 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 MYO18AQ92614 2054 aaKnown RBP4.1□□□□□ -1.75
LIG3-211ENST00000588713 JMJD1CQ15652 2540 aa4.1□□□□□ -1.75
LIG3-211ENST00000588713 COL6A5A8TX70 2615 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ZNF106Q9H2Y7 1883 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 ANKRD36A6QL64 1941 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 KIF26BQ2KJY2 2108 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 MYOCOSA0A1B0GUC4 107 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 A0A1W2PR77 199 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 TCRBV3S1A0A5B6 114 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 HMX2A2RU54 273 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 FAM221AA4D161 298 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 RGSL1A5PLK6 1076 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ANKUB1A6NFN9 424 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 LRRIQ4A6NIV6 560 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 NEDD8-MDP1E9PL57 170 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 F8VP50 259 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 H3BMQ9 156 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 K7EPI3 171 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 PSMD12O00232 456 aaPredicted RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 KPNA4O00629 521 aaPredicted RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 CYB561D2O14569 222 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ACOT8O14734 319 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 GNB5O14775 395 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 AREL1O15033 823 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ZBTB39O15060 712 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 MUSKO15146 869 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 LRRTM2O43300 516 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 HTRA2O43464 458 aaPredicted RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 MED7O43513 233 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 BNIP3LO60238 219 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 GCATO75600 419 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 SORBS2O94875 1100 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 ENDOD1O94919 500 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 VNN1O95497 513 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 STAMBPO95630 424 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 HSPA4LO95757 839 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 F9P00740 461 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ASS1P00966 412 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 FUCA1P04066 466 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 ALDOAP04075 364 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 ITGB3P05106 788 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 EPHX1P07099 455 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 PDGFRBP09619 1106 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 GSTT2P0CG29 244 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 GSTT2BP0CG30 244 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 RALBP11234 206 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 COL6A2P12110 1019 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 FCGR1AP12314 374 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 TCF3P15923 654 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 PTPN1P18031 435 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 PGAM1P18669 254 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 NCF2P19878 526 aaPredicted RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 DGKAP23743 735 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 EPHA3P29320 983 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 SLC7A1P30825 629 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 RPL9P32969 192 aaKnown RBP4.09□□□□□ -1.75
LIG3-211ENST00000588713 SERPINB5P36952 375 aa4.09□□□□□ -1.75
LIG3-211ENST00000588713 GP5P40197 560 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms