RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 ZNF517Q6ZMY9 492 aaPredicted RBP13.9□□□□□ -0.18
VMP1-206ENST00000587945 SYVN1Q86TM6 617 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 APLFQ8IW19 511 aaPredicted RBP13.9□□□□□ -0.18
VMP1-206ENST00000587945 DSELQ8IZU8 1212 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 ENDOVQ8N8Q3 282 aaKnown RBP13.9□□□□□ -0.18
VMP1-206ENST00000587945 DNAAF3Q8N9W5 541 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 TEX19Q8NA77 164 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 C1orf54Q8WWF1 131 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 ELMO1Q92556 727 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 CLIP3Q96DZ5 547 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 TRAPPC9Q96Q05 1148 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 PITPNM3Q9BZ71 974 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 PCMTD2Q9NV79 361 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 ASF1AQ9Y294 204 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 HECTD1Q9ULT8 2610 aa13.9□□□□□ -0.18
VMP1-206ENST00000587945 SPENQ96T58 3664 aaKnown RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 C2orf74A8MZ97 194 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 LIASO43766 372 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ETS1P14921 441 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 CYP2A7P20853 494 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ACADLP28330 430 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 RORAP35398 523 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 NSG1P42857 185 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 CCL11P51671 97 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 CSE1LP55060 971 aaKnown RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 MLLT10P55197 1068 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 GSDMDP57764 484 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 SNX1Q13596 522 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ITIH4Q14624 930 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 OASLQ15646 514 aaKnown RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 PTCHD3Q3KNS1 767 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 UNC5AQ6ZN44 842 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 CDHR3Q6ZTQ4 885 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 LINC00523Q86TU6 105 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 OR13J1Q8NGT2 312 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 THAP4Q8WY91 577 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 CPT1BQ92523 772 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 HDAC10Q969S8 669 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ZNF778Q96MU6 729 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 LRFN5Q96NI6 719 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ACTR5Q9H9F9 607 aaPredicted RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 FAM60AQ9NP50 221 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 IMPACTQ9P2X3 320 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 PLAGL1Q9UM63 463 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 TDRKHQ9Y2W6 561 aaKnown RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 RELNP78509 3460 aa13.89□□□□□ -0.19
VMP1-206ENST00000587945 ZNF106Q9H2Y7 1883 aaKnown RBP13.89□□□□□ -0.19
VMP1-206ENST00000587945 BHMG1C9JSJ3 638 aaPredicted RBP13.88□□□□□ -0.19
VMP1-206ENST00000587945 LIN7AO14910 233 aaPredicted RBP13.88□□□□□ -0.19
VMP1-206ENST00000587945 GOT2P00505 430 aaKnown RBP13.88□□□□□ -0.19
VMP1-206ENST00000587945 FTH1P02794 183 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 CAPN1P07384 714 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 GSTM1P09488 218 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 TPBGLP0DKB5 382 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 ATXN8OSP0DMR3 200 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 STIP1P31948 543 aaKnown RBP13.88□□□□□ -0.19
VMP1-206ENST00000587945 PTGIRP43119 386 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 GSTM4Q03013 218 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 CDH17Q12864 832 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 ZIC1Q15915 447 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 TSTD2Q5T7W7 516 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 IZUMO3Q5VZ72 239 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SPESP1Q6UW49 350 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 FAM198BQ6UWH4 519 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 PACS1Q6VY07 963 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 PPP1R21Q6ZMI0 780 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SYTL1Q8IYJ3 562 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 TXLNBQ8N3L3 684 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SEC14L1Q92503 715 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 ING2Q9H160 280 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SYTL2Q9HCH5 934 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SPHK1Q9NYA1 384 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SERTAD3Q9UJW9 196 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 SNX7Q9UNH6 387 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 ZNF148Q9UQR1 794 aa13.88□□□□□ -0.19
VMP1-206ENST00000587945 UBR5O95071 2799 aaPredicted RBP13.88□□□□□ -0.19
VMP1-206ENST00000587945 SLC5A10A0PJK1 596 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 E7EQ34 232 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 E7EVH7 732 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 MAP3K7O43318 606 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 ZNF749O43361 778 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 HCRTR1O43613 425 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 SUN1O94901 812 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 CTSBP07858 339 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 RAB40ALP0C0E4 278 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 OR56A5P0C7T3 313 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 UGT2B7P16662 529 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 FDFT1P37268 417 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 ITGA1P56199 1179 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 DEFB110Q30KQ9 67 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 SYTL3Q4VX76 610 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 SEL1L2Q5TEA6 688 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 ZNF534Q76KX8 674 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 HOOK3Q86VS8 718 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 SLC13A5Q86YT5 568 aaPredicted RBP13.87□□□□□ -0.19
VMP1-206ENST00000587945 FAM20CQ8IXL6 584 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 GLIS1Q8NBF1 620 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 OR6P1Q8NGX9 317 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 ADAMTS17Q8TE56 1095 aa13.87□□□□□ -0.19
VMP1-206ENST00000587945 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms