RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 F3P13726 295 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 RPL10P27635 214 aaKnown RBP10.48□□□□□ -0.73
SS18-213ENST00000579640 NDUFS1P28331 727 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 RPIAP49247 311 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 NFKB2Q00653 900 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TGFBIQ15582 683 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 ZNF423Q2M1K9 1284 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 LAIR1Q6GTX8 287 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 SLC30A9Q6PML9 568 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 DCUN1D3Q8IWE4 304 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TRIM42Q8IWZ5 723 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TBC1D21Q8IYX1 336 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TCAIMQ8N3R3 496 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 CFAP61Q8NHU2 1237 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 CCL4L1Q8NHW4 92 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 DYDC1Q8WWB3 177 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 C12orf66Q96MD2 445 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 ELF4Q99607 663 aaPredicted RBP10.48□□□□□ -0.73
SS18-213ENST00000579640 PAIP2Q9BPZ3 127 aaKnown RBP10.48□□□□□ -0.73
SS18-213ENST00000579640 KCNH6Q9H252 994 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TRIT1Q9H3H1 467 aaKnown RBP10.48□□□□□ -0.73
SS18-213ENST00000579640 MVB12BQ9H7P6 319 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 CAPN10Q9HC96 672 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 PRDM8Q9NQV8 689 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TAAR2Q9P1P5 351 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 TBC1D29Q9UFV1 150 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 PSMD13Q9UNM6 376 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 PDE10AQ9Y233 779 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 ASF1AQ9Y294 204 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 CSNK1G3Q9Y6M4 447 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 R4GN57 208 aa10.48□□□□□ -0.73
SS18-213ENST00000579640 A6NCN8 305 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 ARHGEF33A8MVX0 844 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 AQP9O43315 295 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KLK8O60259 260 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 PIAS2O75928 621 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 C1orf105O95561 183 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 CFIP05156 583 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 SYPP08247 313 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 ANXA5P08758 320 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 MTHFD2P13995 350 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 GFAPP14136 432 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KCNC1P48547 511 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 NAA20P61599 178 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 BNC1Q01954 994 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 PCLAFQ15004 111 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 PHKG1Q16816 387 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 RAB44Q7Z6P3 723 aaPredicted RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 NUDCD3Q8IVD9 361 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 FBXO39Q8N4B4 442 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 AVL9Q8NBF6 648 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 PDPRQ8NCN5 879 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 ZNF548Q8NEK5 533 aaPredicted RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 SPDYE1Q8NFV5 336 aaPredicted RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 OR5K2Q8NHB8 316 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 RAB3IL1Q8TBN0 382 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 LMX1AQ8TE12 382 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 ATL1Q8WXF7 558 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 DLG3Q92796 817 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 RAD51AP1Q96B01 352 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 CCDC138Q96M89 665 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 INSM2Q96T92 566 aaPredicted RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 MLXIPLQ9NP71 852 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 OXSMQ9NWU1 459 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 CD274Q9NZQ7 290 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 POLG2Q9UHN1 485 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 DOLKQ9UPQ8 538 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 WDR37Q9Y2I8 494 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 COLEC10Q9Y6Z7 277 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 CACNA1EQ15878 2313 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KIR2DS5A0A0G2JLQ3 304 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 A0A0G2JNG1 304 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 A8MT66 165 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 LMO7DNF2Z398 122 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 STX16-NPEPL1H3BU86 382 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KIR2DS3K7RE56 304 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 UBXN8O00124 270 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 STX16O14662 325 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KDM1AO60341 852 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 DLX3O60479 287 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 TRIM13O60858 407 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 H2AFYO75367 372 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 IPO13O94829 963 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 MTHFD1P11586 935 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 ALDH3A1P30838 453 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 MPLP40238 635 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 MDH1P40925 334 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 HNMTP50135 292 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 ALDH18A1P54886 795 aaKnown RBP10.47□□□□□ -0.73
SS18-213ENST00000579640 DNAJB13P59910 316 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 GRIK2Q13002 908 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 C1orf61Q13536 156 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 KIR2DS5Q14953 304 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 CLCA4Q14CN2 919 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 RPE65Q16518 533 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 LPAL2Q16609 132 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 TUBB8Q3ZCM7 444 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 TRIM61Q5EBN2 209 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 LIPMQ5VYY2 423 aa10.47□□□□□ -0.73
SS18-213ENST00000579640 SULT1C3Q6IMI6 304 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms