RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TM9SF3Q9HD45 589 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 ASAH2Q9NR71 780 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SLC35D1Q9NTN3 355 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 LIN7CQ9NUP9 197 aaKnown RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 ZNHIT6Q9NWK9 470 aaKnown RBP6.08□□□□□ -1.44
VPS53-212ENST00000572259 SLC45A2Q9UMX9 530 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 SORCS3Q9UPU3 1222 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 INSL5Q9Y5Q6 135 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 F5P12259 2224 aa6.08□□□□□ -1.44
VPS53-212ENST00000572259 TRIOO75962 3097 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 TECTAO75443 2155 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 MUC3AQ02505 3323 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 TCRBV21S2A2A0A5A6 115 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 C2CD4DB7Z1M9 353 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 DIRC3C9JPN6 131 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 LEFTY2O00292 366 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 TACC1O75410 805 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 GNA14O95837 355 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CFIP05156 583 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 RHOP08100 348 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SRCP12931 536 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ERCC2P18074 760 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CCNE1P24864 410 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 PTPN3P26045 913 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 APOBEC3AP31941 199 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 RABIFP47224 123 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ATP5OP48047 213 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CAMLGP49069 296 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 STX1BP61266 288 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 RPL10AP62906 217 aaKnown RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 TWF1Q12792 350 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 TMEM115Q12893 351 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 TUBB3Q13509 450 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ZNF699Q32M78 642 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 DNTTIP2Q5QJE6 756 aaKnown RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 C1QL3Q5VWW1 255 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CENPPQ6IPU0 288 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 FOXR2Q6PJQ5 311 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CLEC17AQ6ZS10 378 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CACNA2D4Q7Z3S7 1137 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 TRABD2AQ86V40 505 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SPATA2LQ8IUW3 424 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 SYT12Q8IV01 421 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CNTN4Q8IWV2 1026 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 PDCL2Q8N4E4 241 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 RNF139Q8WU17 664 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SLC13A3Q8WWT9 602 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 FAM149B1Q96BN6 582 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ZNF707Q96C28 371 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 INTS12Q96CB8 462 aaKnown RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 SAT2Q96F10 170 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 GIMAP5Q96F15 307 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 PGLYRP2Q96PD5 576 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CDK5RAP1Q96SZ6 601 aaKnown RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 PKP4Q99569 1192 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 NUDT22Q9BRQ3 303 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ACPTQ9BZG2 426 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SIK2Q9H0K1 926 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 PCED1AQ9H1Q7 454 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SLC25A32Q9H2D1 315 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SLC32A1Q9H598 525 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 AURKAIP1Q9NWT8 199 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 NMRK1Q9NWW6 199 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 ALKBH4Q9NXW9 302 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 GDE1Q9NZC3 331 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 UXTQ9UBK9 157 aaPredicted RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 FETUBQ9UGM5 382 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 MUTYHQ9UIF7 546 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 SIX4Q9UIU6 781 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 PTBP2Q9UKA9 531 aaKnown RBP6.07□□□□□ -1.44
VPS53-212ENST00000572259 CDH9Q9ULB4 789 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 CDH7Q9ULB5 785 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 NOTCH4Q99466 2003 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 DENND4AQ7Z401 1863 aa6.07□□□□□ -1.44
VPS53-212ENST00000572259 DENND4CQ5VZ89 1909 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CCDC187A0A096LP49 1063 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 KRTAP23-1A1A580 65 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 MTMR11A4FU01 709 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SH2D7A6NKC9 451 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 LRRIQ3A6PVS8 624 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 A8MXQ7 604 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SLC16A3O15427 465 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 N4BP1O75113 896 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 AKAP3O75969 853 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SCAF4O95104 1147 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 SEC24AO95486 1093 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ALPPP05187 535 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 OR4Q2P0C623 313 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ALPPL2P10696 532 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 WARSP23381 471 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 ACRV1P26436 265 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ANXA13P27216 316 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CDC25CP30307 473 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 STIP1P31948 543 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 PTDSS1P48651 473 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 CASP4P49662 377 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ZNF135P52742 658 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 CAPZA1P52907 286 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CASP9P55211 416 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms