RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MSS51Q4VC12 460 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 UBE2J2Q8N2K1 259 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 DNAJA4Q8WW22 397 aaPredicted RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 RPL3LQ92901 407 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 ASB9Q96DX5 294 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 CDCA5Q96FF9 252 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ZDHHC12Q96GR4 267 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 SLIRPQ9GZT3 109 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 PDZD7Q9H5P4 517 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 TBC1D13Q9NVG8 400 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 TNFSF13BQ9Y275 285 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 FARP1Q9Y4F1 1045 aaPredicted RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 PCDHGB6Q9Y5F9 930 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 PMS2P1A4D2B8 440 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 CST8O60676 142 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 C2P06681 752 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 MYL4P12829 197 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ATXN1P54253 815 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 ZNF91Q05481 1191 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 PITRM1Q5JRX3 1037 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 SEL1L3Q68CR1 1132 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 EFCAB12Q6NXP0 572 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 XKRXQ6PP77 449 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 LAYNQ6UX15 382 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 SPOCD1Q6ZMY3 1216 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 XYLT1Q86Y38 959 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 EPHX4Q8IUS5 362 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ADAMTS14Q8WXS8 1223 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 EXOSC8Q96B26 276 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 MRPL48Q96GC5 212 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 PEBP4Q96S96 227 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 POLG2Q9UHN1 485 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ZNF639Q9UID6 485 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ASB4Q9Y574 426 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 DOCK3Q8IZD9 2030 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 SYNJ2BP-COX16A0A087WUM0 186 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 A0A1B0GTQ1 180 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 ATP6AP2A0A1C7CYW4 349 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 CARNS1A5YM72 827 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 C9IYK1 514 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 PAPSS1O43252 624 aaPredicted RBP10.65□□□□□ -0.71
CLK3-226ENST00000569406 ZNF30P17039 623 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 NRLP54845 237 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 SLC9B1Q4ZJI4 515 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 FNBP1LQ5T0N5 605 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 SH3PXD2AQ5TCZ1 1133 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 PNCKQ6P2M8 343 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 CYP4Z2PQ8N1L4 340 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 CLRN3Q8NCR9 226 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 RORBQ92753 470 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 RAB7BQ96AH8 199 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 TRMT2BQ96GJ1 504 aaKnown RBP10.65□□□□□ -0.71
CLK3-226ENST00000569406 BTN2A3PQ96KV6 586 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 TRIM8Q9BZR9 551 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 WNT5BQ9H1J7 359 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 WDR55Q9H6Y2 383 aaPredicted RBP10.65□□□□□ -0.71
CLK3-226ENST00000569406 MAP10Q9P2G4 905 aa10.65□□□□□ -0.71
CLK3-226ENST00000569406 SLC9B1P1A6NJY1 282 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ZNF99A8MXY4 864 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 H7C2Y5 167 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ZBTB24O43167 697 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 GABRB2P47870 512 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 GP2P55259 537 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 CYP4F8P98187 520 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 KLHL12Q53G59 568 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 HSD17B12Q53GQ0 312 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 SPANXN2Q5MJ10 180 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 JADE1Q6IE81 842 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CES3Q6UWW8 571 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 KHSRPQ92945 711 aaKnown RBP eCLIP10.64□□□□□ -0.71
CLK3-226ENST00000569406 FAF2Q96CS3 445 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ATXN7L3BQ96GX2 97 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 WDR77Q9BQA1 342 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 YTHDF1Q9BYJ9 559 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 MN1Q10571 1320 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 EIF1BO60739 113 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 NIPSNAP2O75323 286 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CILPO75339 1184 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 SLC25A27O95847 323 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 WDPCPO95876 746 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 POMCP01189 267 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CYBBP04839 570 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 BMP2P12643 396 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 EIF1P41567 113 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 BRCC3P46736 316 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 TKTL1P51854 596 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ERVK-25P63136 954 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CHAF1BQ13112 559 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 BAMBIQ13145 260 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 SMAD2Q15796 467 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 PSMD5Q16401 504 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 AKIRIN2Q53H80 203 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CYBRD1Q53TN4 286 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 RUNDC3AQ59EK9 446 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CRTC1Q6UUV9 634 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 TRNT1Q96Q11 434 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 PAPOLGQ9BWT3 736 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 ERVK-6Q9BXR3 956 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ZCCHC2Q9C0B9 1178 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms