RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TUBB3Q13509 450 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SCARB2Q14108 478 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF169Q14929 603 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 ARHGAP19Q14CB8 494 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PDK3Q15120 406 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TAF5Q15542 800 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TRIP13Q15645 432 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 SLC15A2Q16348 729 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 KYAT1Q16773 422 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MMEL1Q495T6 779 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 YIF1BQ5BJH7 314 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MARCH8Q5T0T0 291 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MPP7Q5T2T1 576 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 GARNL3Q5VVW2 1013 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RAB12Q6IQ22 244 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SYCE2Q6PIF2 218 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PAPD4Q6PIY7 484 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 C5orf46Q6UWT4 87 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RGS9BPQ6ZS82 235 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 BRINP3Q76B58 766 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PPP1R3BQ86XI6 285 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 KRT73Q86Y46 540 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FAM90A1Q86YD7 464 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SRRM1Q8IYB3 904 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF34Q8IZ26 560 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 EID3Q8N140 333 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CLIP4Q8N3C7 705 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 LNX2Q8N448 690 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SRBD1Q8N5C6 995 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 GLIS1Q8NBF1 620 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 LEMD2Q8NC56 503 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 C11orf65Q8NCR3 313 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 DENND6BQ8NEG7 585 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FAM46DQ8NEK8 389 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TRPV3Q8NET8 790 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SLC24A4Q8NFF2 622 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ENGASEQ8NFI3 743 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 OR4D10Q8NGI6 311 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 OR9A1PQ8NGU1 263 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 POC1BQ8TC44 478 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 METTL6Q8TCB7 284 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF398Q8TD17 642 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TCP10LQ8TDR4 215 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PIK3R3Q92569 461 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 AKAP1Q92667 903 aaKnown RBP eCLIP3.21□□□□□ -1.9
VPS35-208ENST00000568612 UFD1Q92890 307 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 GLG1Q92896 1179 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 USP13Q92995 863 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 RFKQ969G6 155 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF566Q969W8 418 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TESCQ96BS2 214 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MTFMTQ96DP5 389 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 SLC35A4Q96G79 324 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 LRIG1Q96JA1 1093 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CAMK1GQ96NX5 476 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NUP88Q99567 741 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 ELAC2Q9BQ52 826 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 UBAC1Q9BSL1 405 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FSD1Q9BTV5 496 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 DUSP26Q9BV47 211 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 KIFC1Q9BW19 673 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TBC1D10AQ9BXI6 508 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FRMD8Q9BZ67 464 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 TPSD1Q9BZJ3 242 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SLC19A3Q9BZV2 496 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TRIM2Q9C040 744 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ABCG8Q9H221 673 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SMOC2Q9H3U7 446 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 EBF3Q9H4W6 596 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 Q9H521 79 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NMUR1Q9HB89 426 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CPNE5Q9HCH3 593 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SARS2Q9NP81 518 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 CNNM1Q9NRU3 951 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 VPS45Q9NRW7 570 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RASSF1Q9NS23 344 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 C20orf96Q9NUD7 363 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 MRPS18AQ9NVS2 196 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 RLIMQ9NVW2 624 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 COA4Q9NYJ1 87 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NPAP1Q9NZP6 1156 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZIM2Q9NZV7 527 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 COX16Q9P0S2 106 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RCOR3Q9P2K3 495 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 SRP68Q9UHB9 627 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 BCAP29Q9UHQ4 241 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CPA4Q9UI42 421 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 DAPK2Q9UIK4 370 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 APPL1Q9UKG1 709 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CAPN11Q9UMQ6 739 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PCDHA6Q9UN73 950 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CPQQ9Y646 472 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 AUP1Q9Y679 476 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 DNMT1P26358 1616 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 COL15A1P39059 1388 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 UNC13BO14795 1591 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CUL7Q14999 1698 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 ZMYM6O95789 1325 aa3.2□□□□□ -1.9
VPS35-208ENST00000568612 MN1Q10571 1320 aaPredicted RBP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms