RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 YPEL5P62699 121 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RPL10AP62906 217 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 VAMP2P63027 116 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MAT1AQ00266 395 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 NPRL3Q12980 569 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 EZH2Q15910 746 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 MGAT5BQ3V5L5 792 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MCMDC2Q4G0Z9 681 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ZC2HC1CQ53FD0 456 aaPredicted RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 BRMS1LQ5PSV4 323 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 TREML2Q5T2D2 321 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 FAXCQ5TGI0 409 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 C1orf146Q5VVC0 180 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DUPD1Q68J44 220 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 SULT6B1Q6IMI4 303 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RGS7BPQ6MZT1 257 aaPredicted RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 NPNTQ6UXI9 565 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RTL4Q6ZR62 310 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 SZRD1Q7Z422 152 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DCXRQ7Z4W1 244 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 CROCCP3Q8IVE0 287 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ZNF679Q8IYX0 411 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ZNF781Q8N8C0 355 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 KBTBD3Q8NAB2 608 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MCOLN3Q8TDD5 553 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 SLC20A1Q8WUM9 679 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 LIPHQ8WWY8 451 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ATG4AQ8WYN0 398 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 POMGNT1Q8WZA1 660 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 OR1E3Q8WZA6 343 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 ST8SIA4Q92187 359 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MYDGFQ969H8 173 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 GDAP1L1Q96MZ0 367 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RAB3IPQ96QF0 476 aaPredicted RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 RANBP9Q96S59 729 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 TMEM60Q9H2L4 133 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 NDST4Q9H3R1 872 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DHX33Q9H6R0 707 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 MRPL44Q9H9J2 332 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 GLOD4Q9HC38 313 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 C19orf12Q9NSK7 152 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 PARVAQ9NVD7 372 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 EXD2Q9NVH0 621 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 TRNAU1APQ9NX07 287 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 NDE1Q9NXR1 346 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 KLHL28Q9NXS3 571 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 DDX43Q9NXZ2 648 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 ENOPH1Q9UHY7 261 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 MTMR6Q9Y217 621 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 RUVBL2Q9Y230 463 aaKnown RBP5.02□□□□□ -1.61
VPS35-205ENST00000563984 POMT1Q9Y6A1 747 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 PLEKHG1Q9ULL1 1385 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 WDR62O43379 1518 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 HMGXB3Q12766 1538 aa5.02□□□□□ -1.61
VPS35-205ENST00000563984 FER1L4A9Z1Z3 1794 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CDHR2Q9BYE9 1310 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PCDH11XQ9BZA7 1347 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PCDH11YQ9BZA8 1340 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 A0A075B6Q4 140 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 A0A1W2PRG0 241 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC15A5A6NIM6 579 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PROB1E7EW31 1015 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 FAM86B1E9PN63 330 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 WRBO00258 174 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 POLR1CO15160 346 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 RNMTO43148 476 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 AKR7A2O43488 359 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 JTBO76095 146 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PLEKHA8P1O95397 391 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DHFRP00374 187 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PRKCGP05129 697 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CALB1P05937 261 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 LIPFP07098 398 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 IL6RP08887 468 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 UBTFL1P0CB47 393 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 PKMP14618 531 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 CALB2P22676 271 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CD1BP29016 333 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PKLRP30613 574 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CORO1AP31146 461 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 CYP2C18P33260 490 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ARL3P36405 182 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 MDH1P40925 334 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 STAT6P42226 847 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CDKN1BP46527 198 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 GABRB2P47870 512 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC11A1P49279 550 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CCR9P51686 369 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ITGA8P53708 1063 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 AP1S2P56377 157 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SPCS3P61009 180 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PPATQ06203 517 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 C2orf54Q08AI8 447 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 EPS8Q12929 822 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 FOXF2Q12947 444 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DGCR6Q14129 220 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 KARSQ15046 597 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 TWISTNBQ3B726 338 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 ZNF829Q3KNS6 432 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 YIF1BQ5BJH7 314 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms