RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CPNE6O95741 557 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 RPLP0P05388 317 aaKnown RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 C8GP07360 202 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 CYP2A7P20853 494 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 MAP4P27816 1152 aaKnown RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 ACADLP28330 430 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 ALDH4A1P30038 563 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 SHMT2P34897 504 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 HSD17B3P37058 310 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 CDKN2DP55273 166 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 TAS2R39P59534 338 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 PRKAA1Q13131 559 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 SPIDRQ14159 915 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 GPR18Q14330 331 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 ZKSCAN8Q15776 578 aaPredicted RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 ACSBG2Q5FVE4 666 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 DUS1LQ6P1R4 473 aaKnown RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 PAQR3Q6TCH7 311 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 XKR5Q6UX68 686 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 TBC1D1Q86TI0 1168 aaPredicted RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 PIM3Q86V86 326 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 OOSP2Q86WS3 158 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 SFTPA2Q8IWL1 248 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 RIBC1Q8N443 379 aaPredicted RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 MREGQ8N565 214 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 CFAP61Q8NHU2 1237 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 UHMK1Q8TAS1 419 aaKnown RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 TSNARE1Q96NA8 513 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 OLFM1Q99784 485 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 HGH1Q9BTY7 390 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 TLK1Q9UKI8 766 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 CFAP20Q9Y6A4 193 aaKnown RBP9.82□□□□□ -0.84
USP3-216ENST00000559873 SPTBN4Q9H254 2564 aa9.82□□□□□ -0.84
USP3-216ENST00000559873 LAMA1P25391 3075 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 A0A087X1B8 175 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 DCDC2BA2VCK2 349 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 PCNX2A6NKB5 2137 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 SLC16A5O15375 505 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ZBTB14O43829 449 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 UBXN7O94888 489 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 PROS1P07225 676 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ENO2P09104 434 aaPredicted RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 NUDT17P0C025 328 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 HIST1H2AGP0C0S8 130 aaPredicted RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 MYF5P13349 255 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 HIST1H2ADP20671 130 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 TYK2P29597 1187 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 HSD17B2P37059 387 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 SLC26A3P40879 764 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 CAPZBP47756 277 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 KPNA2P52292 529 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 ATP6V0D1P61421 351 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ABRQ12979 859 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 BMPR2Q13873 1038 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 AMZ1Q400G9 498 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 PPM1JQ5JR12 505 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 PERM1Q5SV97 790 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 UBAP2Q5T6F2 1119 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 MROH9Q5TGP6 573 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ARMC6Q6NXE6 501 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 RBM44Q6ZP01 1051 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 DGLUCYQ7Z3D6 616 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 PIWIL4Q7Z3Z4 852 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 CROCCP2Q86T23 111 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ADAMTSL2Q86TH1 951 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 VRK3Q8IV63 474 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 Q8N9G6 341 aaPredicted RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 FBXO15Q8NCQ5 510 aaPredicted RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 OR52E1Q8NGJ3 308 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 OR5AR1Q8NGP9 310 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 LCN9Q8WX39 176 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 ANKRD7Q92527 254 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 CABS1Q96KC9 395 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 HIST1H2AHQ96KK5 128 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 GFM1Q96RP9 751 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 SLC30A3Q99726 388 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 HIST1H2AJQ99878 128 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 H2AFJQ9BTM1 129 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 TRIM54Q9BYV2 358 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 EPB41L4BQ9H329 900 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 LRRN3Q9H3W5 708 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 SRMSQ9H3Y6 488 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 TFB2MQ9H5Q4 396 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 SPATA7Q9P0W8 599 aa9.81□□□□□ -0.84
USP3-216ENST00000559873 TSR3Q9UJK0 312 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 TDRKHQ9Y2W6 561 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 MTO1Q9Y2Z2 717 aaKnown RBP9.81□□□□□ -0.84
USP3-216ENST00000559873 SPTBN2O15020 2390 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 IGHV1OR21-1A0A087WYE8 117 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 D6RAR5 112 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 TMX2-CTNND1H3BSU7 103 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 PHGDHO43175 533 aaKnown RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 CTIFO43310 598 aaKnown RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 OPA1O60313 960 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 CDH16O75309 829 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 PSIP1O75475 530 aaKnown RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 FAM155BO75949 473 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 DKK1O94907 266 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 MATN4O95460 622 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 SNRPAP09012 282 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms