RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 B3GNT8Q7Z7M8 397 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 HIPK1Q86Z02 1210 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PIANPQ8IYJ0 282 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TTC29Q8NA56 475 aaPredicted RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 PYCR2Q96C36 320 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 ZNF583Q96ND8 569 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MFSD1Q9H3U5 465 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PARVBQ9HBI1 364 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 ADPRHL2Q9NX46 363 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SNX6Q9UNH7 406 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 UGT2A1Q9Y4X1 527 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CCRL2O00421 344 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MUSKO15146 869 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 ALOX5P09917 674 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PAX3P23760 479 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MC4RP32245 332 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 ATP4BP51164 291 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TBX4P57082 545 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TUBA3CQ13748 450 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PON2Q15165 354 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 DEPDC1Q5TB30 811 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PIK3R6Q5UE93 754 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 OVOS1Q6IE37 1185 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TAPT1Q6NXT6 567 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TRAF7Q6Q0C0 670 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CEP68Q76N32 757 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CACTIN-AS1Q8N1I8 211 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 LEMD2Q8NC56 503 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 BPIFB1Q8TDL5 484 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 UBASH3BQ8TF42 649 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MUL1Q969V5 352 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 FKBP10Q96AY3 582 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 AARSD1Q9BTE6 412 aaKnown RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 EBPLQ9BY08 206 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SLC6A13Q9NSD5 602 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TAS2R16Q9NYV7 291 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 STX7O15400 261 aaKnown RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 KERAO60938 352 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 GPR32O75388 356 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 CREG1O75629 220 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 PAPSS2O95340 614 aaPredicted RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 ITGB1P05556 798 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 SERPINF2P08697 491 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 TNFRSF1BP20333 461 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 FDXRP22570 491 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 MXD1Q05195 221 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 NECAB2Q7Z6G3 386 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 DCP2Q8IU60 420 aaKnown RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 IGSF8Q969P0 613 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 ZNF599Q96NL3 588 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 DEPDC7Q96QD5 511 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 OSBPL10Q9BXB5 764 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 KRT84Q9NSB2 600 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 VNN3Q9NY84 501 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 USE1Q9NZ43 259 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 OGDHLQ9ULD0 1010 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 EIF3LQ9Y262 564 aaKnown RBP11.13□□□□□ -0.63
LDLR-208ENST00000558518 SPO11Q9Y5K1 396 aa11.13□□□□□ -0.63
LDLR-208ENST00000558518 RFPL2O75678 378 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 RPP40O75818 363 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 MATN4O95460 622 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 GLUD1P00367 558 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 IRF1P10914 325 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 GADD45AP24522 165 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 POLD2P49005 469 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 SF1Q15637 639 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 HIST2H2ACQ16777 129 aaPredicted RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 DOK6Q6PKX4 331 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 C16orf59Q7L2K0 433 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 C10orf111Q8N326 155 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 PGBD5Q8N414 524 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 RNF175Q8N4F7 328 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 TTC30BQ8N4P2 665 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 OR6Q1Q8NGQ2 317 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 IMP4Q96G21 291 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 ASB2Q96Q27 587 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 YTHDF1Q9BYJ9 559 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 NUAK2Q9H093 628 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 KAT8Q9H7Z6 458 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 ABCG2Q9UNQ0 655 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 DERAQ9Y315 318 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 FAM92AA1XBS5 289 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 TRIM64CA6NLI5 447 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 AP3D1O14617 1153 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 SLC22A1O15245 554 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 TULP3O75386 442 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 OPN1SWP03999 348 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 ALDH2P05091 517 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 GGT1P19440 569 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 ISL1P61371 349 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 MVKQ03426 396 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 MED22Q15528 200 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 ARMC12Q5T9G4 340 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 PDE12Q6L8Q7 609 aaKnown RBP11.12□□□□□ -0.63
LDLR-208ENST00000558518 ZFAND4Q86XD8 727 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 COLGALT2Q8IYK4 626 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 C7orf57Q8NEG2 295 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 SPPL2AQ8TCT8 520 aa11.12□□□□□ -0.63
LDLR-208ENST00000558518 INPP5KQ9BT40 448 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms