RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 FAM13AO94988 1023 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CCNDBP1O95273 360 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CALCAP01258 141 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CD53P19397 219 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 PTAFRP25105 342 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 SOX6P35712 828 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CTSKP43235 329 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CLCN5P51795 746 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CAPZA1P52907 286 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 GCNT1Q02742 428 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 CCINQ13939 588 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 MAP1SQ66K74 1059 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-226ENST00000556825 PGAP3Q96FM1 320 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF285Q96NJ3 590 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 GSX2Q9BZM3 304 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 RAB6BQ9NRW1 208 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 RGS18Q9NS28 235 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 ABCC13Q9NSE7 274 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 KIF25Q9UIL4 384 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 ADAM30Q9UKF2 790 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 RNF6Q9Y252 685 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 SCN7AQ01118 1682 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 EFCAB7A8K855 629 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 CHURC1-FNTBB4DL54 471 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 hCG_1984214I3L0E3 225 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MT-ND1P03886 318 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 IL6P05231 212 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SERPINF2P08697 491 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 FAM86B2P0C5J1 330 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 H2AFB1P0C5Y9 115 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 H2AFB2P0C5Z0 115 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 GADD45AP24522 165 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 S100PP25815 95 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 LIPAP38571 399 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 KIR2DL3P43628 341 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 RRAS2P62070 204 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 KCNAB2Q13303 367 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PYCR3Q53H96 274 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 DARS2Q6PI48 645 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SRFBP1Q8NEF9 429 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 CNIH3Q8TBE1 160 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 GTF3AQ92664 365 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 TCEAL3Q969E4 200 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MYLPFQ96A32 169 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PYCR2Q96C36 320 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PAPOLGQ9BWT3 736 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 C11orf54Q9H0W9 315 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 LYARQ9NX58 379 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SCN3BQ9NY72 215 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 NDRG3Q9UGV2 375 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MLXQ9UH92 298 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 GGA1Q9UJY5 639 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ING4Q9UNL4 249 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MGAT4BQ9UQ53 548 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 A0A1W2PPL8 197 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 FAM170BA6NMN3 283 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 RGS10O43665 173 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PRPSAP2O60256 369 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SUPT7LO94864 414 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 LTFP02788 710 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SMIM6P0DI80 62 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ACO1P21399 889 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ACSL1P33121 698 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 GRIA4P48058 902 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 P2RY4P51582 365 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 TOR1AIP1Q5JTV8 583 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SLC27A4Q6P1M0 643 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PKN3Q6P5Z2 889 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 DPP8Q6V1X1 898 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 C17orf107Q6ZR85 190 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF720Q7Z2F6 126 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 GPR155Q7Z3F1 870 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MAP4K3Q8IVH8 894 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 RIMKLAQ8IXN7 391 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 CCDC116Q8IYX3 515 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MINDY1Q8N5J2 469 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 SEMA4DQ92854 862 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 VPS39Q96JC1 886 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 PIGSQ96S52 555 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ZBTB18Q99592 522 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 DPCDQ9BVM2 203 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 CLEC4MQ9H2X3 399 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 OR51M1Q9H341 326 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 DDX4Q9NQI0 724 aaKnown RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 ERAP1Q9NZ08 941 aa13.56□□□□□ -0.24
SHMT2-226ENST00000556825 MAGED1Q9Y5V3 778 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-226ENST00000556825 A0A075B6Q4 140 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 TMEM191CA6NGB0 347 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 TTLL8A6PVC2 850 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 MPTX1A8MV57 137 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 UBDO15205 165 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CYP7B1O75881 506 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 SPATA31C1P0DKV0 1188 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 GYG1P46976 350 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 CXCR4P61073 352 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 ORC1Q13415 861 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 DMC1Q14565 340 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 SMTNL2Q2TAL5 461 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 AP5B1Q2VPB7 878 aa13.55□□□□□ -0.24
SHMT2-226ENST00000556825 PLD6Q8N2A8 252 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms