RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 RBFAQ8N0V3 343 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 SVOPLQ8N434 492 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 PHOSPHO2Q8TCD6 241 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 RADILQ96JH8 1075 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 ZSWIM3Q96MP5 696 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 FCRL3Q96P31 734 aaPredicted RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 PELOQ9BRX2 385 aaKnown RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 NAT9Q9BTE0 207 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 WDR18Q9BV38 432 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 TINAGL1Q9GZM7 467 aaPredicted RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 RANBP3Q9H6Z4 567 aaPredicted RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 MRM3Q9HC36 420 aaKnown RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 SMURF1Q9HCE7 757 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 FBRSL1Q9HCM7 1045 aaKnown RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 SLC52A3Q9NQ40 469 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 SPATA6Q9NWH7 488 aaPredicted RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 CUEDC1Q9NWM3 386 aaPredicted RBP9.39□□□□□ -0.91
SIX4-202ENST00000554079 SCN3BQ9NY72 215 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 VPS9D1Q9Y2B5 631 aa9.39□□□□□ -0.91
SIX4-202ENST00000554079 PIPSLA2A3N6 862 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 MROH6A6NGR9 719 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 OR6C65A6NJZ3 312 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 WASHC1A8K0Z3 465 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 PPP6CO00743 305 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ABCD4O14678 606 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 KPNA5O15131 536 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CYP7B1O75881 506 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 RPLP0P05388 317 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 EFNA1P20827 205 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 CHRNA5P30532 468 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CCT3P49368 545 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 CDH6P55285 790 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ZNF91Q05481 1191 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ABRQ12979 859 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 GRM3Q14832 879 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 TATDN3Q17R31 274 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ZACNQ401N2 412 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 MTERF2Q49AM1 385 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 VPS26BQ4G0F5 336 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 COQ5Q5HYK3 327 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SPANXN3Q5MJ09 141 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 FAM219BQ5XKK7 198 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CCDC149Q6ZUS6 474 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 PROSER1Q86XN7 944 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CLEC10AQ8IUN9 316 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 FSTL5Q8N475 847 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 CLRN3Q8NCR9 226 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 FRS2Q8WU20 508 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 PCNPQ8WW12 178 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 FCGR1BQ92637 280 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 GPRASP2Q96D09 838 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SORCS2Q96PQ0 1159 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CGRRF1Q99675 332 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SLC19A3Q9BZV2 496 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 PDGFDQ9GZP0 370 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 ESRP2Q9H6T0 727 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 CARS2Q9HA77 564 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 IL1RAPQ9NPH3 570 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SDHAF3Q9NRP4 125 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 MORF4L1Q9UBU8 362 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 C3orf18Q9UK00 162 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 USP18Q9UMW8 372 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 EP400Q96L91 3159 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 hCG_1807616A0A1W2PRN6 198 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SLC22A23A1A5C7 686 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SLC16A4O15374 487 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 NUPL2O15504 423 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 HS6ST1O60243 411 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 GREM1O60565 184 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 RHOBTB1O94844 696 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ECDO95905 644 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 EPOP01588 193 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CDK1P06493 297 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 ACSM4P0C7M7 580 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SRCP12931 536 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 IL2RBP14784 551 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 HNRNPLP14866 589 aaKnown RBP eCLIP9.38□□□□□ -0.91
SIX4-202ENST00000554079 SDC4P31431 198 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SOX11P35716 441 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 GLRBP48167 497 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CDH13P55290 713 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SESN2P58004 480 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 OR4D2P58180 307 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 GRAPQ13588 217 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 EXOSC2Q13868 293 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 QPRTQ15274 297 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 SMN1Q16637 294 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 TUSC1Q2TAM9 212 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 TRIM60Q495X7 471 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 FLYWCH1Q4VC44 716 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 TOR1AIP1Q5JTV8 583 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 MPP7Q5T2T1 576 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 TDRD10Q5VZ19 366 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 MAP1SQ66K74 1059 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 ANKRD54Q6NXT1 300 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 CES3Q6UWW8 571 aa9.38□□□□□ -0.91
SIX4-202ENST00000554079 PIWIL4Q7Z3Z4 852 aaKnown RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 TSPYL5Q86VY4 417 aaPredicted RBP9.38□□□□□ -0.91
SIX4-202ENST00000554079 TIGD4Q8IY51 512 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms