RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TRABDQ9H4I3 376 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 GLOD4Q9HC38 313 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 FAM60AQ9NP50 221 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.32□□□□□ -0.44
SCAF11-208ENST00000546534 NDOR1Q9UHB4 597 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 HEY1Q9Y5J3 304 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 KLF2Q9Y5W3 355 aaPredicted RBP12.32□□□□□ -0.44
SCAF11-208ENST00000546534 ITPR3Q14573 2671 aa12.32□□□□□ -0.44
SCAF11-208ENST00000546534 CCDC168Q8NDH2 2452 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 HCRTR1O43613 425 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 JRKO75564 520 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 OR2B3O76000 313 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 CHRNA4P43681 627 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 ITGA9Q13797 1035 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 KRTAP21-3Q3LHN1 58 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 AGAP7PQ5VUJ5 663 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 PRAMEF13Q5VWM6 474 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 B3GNTL1Q67FW5 361 aaPredicted RBP12.31□□□□□ -0.44
SCAF11-208ENST00000546534 FAM180AQ6UWF9 173 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 DAAM2Q86T65 1068 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 COG1Q8WTW3 980 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 RAPGEF5Q92565 580 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 N4BP2L2Q92802 583 aaPredicted RBP12.31□□□□□ -0.44
SCAF11-208ENST00000546534 AGAP4Q96P64 663 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 AP1M1Q9BXS5 423 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 DEF6Q9H4E7 631 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 SLC6A20Q9NP91 592 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 DHCR7Q9UBM7 475 aaKnown RBP12.31□□□□□ -0.44
SCAF11-208ENST00000546534 FBXL4Q9UKA2 621 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 HEBP2Q9Y5Z4 205 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 AP1M2Q9Y6Q5 423 aa12.31□□□□□ -0.44
SCAF11-208ENST00000546534 LOC285095A0A1B0GVY8 99 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 KLHL33A6NCF5 533 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 C2orf74A8MZ97 194 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 SGTAO43765 313 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 CTSBP07858 339 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 KDELR1P24390 212 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 GABRA4P48169 554 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 KCNK10P57789 538 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 OTUD4Q01804 1114 aaKnown RBP12.3□□□□□ -0.44
SCAF11-208ENST00000546534 TLR1Q15399 786 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 ZIC1Q15915 447 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 DEFB110Q30KQ9 67 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 NKAIN1Q4KMZ8 207 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 SIRPB2Q5JXA9 342 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 LYPD8Q6UX82 237 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 NPNTQ6UXI9 565 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 TRIM73Q86UV7 250 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 CFAP206Q8IYR0 622 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 ADGRF3Q8IZF5 1079 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 NXPE1Q8N323 547 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 SLC25A41Q8N5S1 370 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 PROKR1Q8TCW9 393 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 ZNF398Q8TD17 642 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 LINC00615Q96LM1 132 aaPredicted RBP12.3□□□□□ -0.44
SCAF11-208ENST00000546534 FERD3LQ96RJ6 166 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 CCM2Q9BSQ5 444 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 XKR8Q9H6D3 395 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 PRDM9Q9NQV7 894 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 SLC22A11Q9NSA0 550 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 OLAHQ9NV23 265 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 SMOXQ9NWM0 555 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 FER1L5A0AVI2 2057 aa12.3□□□□□ -0.44
SCAF11-208ENST00000546534 ZGRF1Q86YA3 2104 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 CELSR1Q9NYQ6 3014 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 A0A0A6YYK5 440 aaPredicted RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PROSCO94903 275 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 S1PR4O95977 384 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PYGMP11217 842 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 COX6B1P14854 86 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 MMP11P24347 488 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 HTR1EP28566 365 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 WNT3AP56704 352 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PTPRCAPQ14761 206 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PDK1Q15118 436 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 BCL7AQ4VC05 210 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 TEX44Q53QW1 395 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 ZNF324BQ6AW86 544 aaPredicted RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 FCRL6Q6DN72 434 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 SPESP1Q6UW49 350 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 KDELC1Q6UW63 502 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 BNC2Q6ZN30 1099 aaPredicted RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 GLT6D1Q7Z4J2 308 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 AMIGO1Q86WK6 493 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 ZNF655Q8N720 491 aaPredicted RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 BCORP1Q8N888 145 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 C19orf47Q8N9M1 422 aaKnown RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PHC3Q8NDX5 983 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 CATSPER1Q8NEC5 780 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 OR52E1Q8NGJ3 308 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 BLOC1S5Q8TDH9 187 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 RBM41Q96IZ5 413 aaKnown RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 TRIM8Q9BZR9 551 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 TFB2MQ9H5Q4 396 aaKnown RBP12.29□□□□□ -0.44
SCAF11-208ENST00000546534 EPS8L2Q9H6S3 715 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 CHST11Q9NPF2 352 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 ACTR10Q9NZ32 417 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 FAM153AQ9UHL3 310 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 PKP3Q9Y446 797 aa12.29□□□□□ -0.44
SCAF11-208ENST00000546534 NF1P21359 2839 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms