RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 HTR1AP08908 422 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 MAP2K4P45985 399 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 PLA2G16P53816 162 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 CYP4F3Q08477 520 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 HSPA14Q0VDF9 509 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 SMN1Q16637 294 aaKnown RBP14.75□□□□□ -0.05
USP28-214ENST00000545540 XAF1Q6GPH4 301 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 UTS2BQ765I0 119 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 KCNJ9Q92806 393 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 PLEKHA8Q96JA3 519 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 FAM118AQ9NWS6 357 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 VNN3Q9NY84 501 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 ZIM2Q9NZV7 527 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 IL17CQ9P0M4 197 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 PCDHB7Q9Y5E2 793 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 PCDHB14Q9Y5E9 798 aa14.75□□□□□ -0.05
USP28-214ENST00000545540 TMEM88BA6NKF7 163 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 ULK1O75385 1050 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 PGRP06401 933 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 RAP2AP10114 183 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 CSKP41240 450 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 ALDH3A2P51648 485 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 HECTD3Q5T447 861 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 COMMD8Q9NX08 183 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 FNIP2Q9P278 1114 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 K7EPI3 171 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 NOL3O60936 208 aaKnown RBP14.74□□□□□ -0.05
USP28-214ENST00000545540 GJA1P17302 382 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 GGT1P19440 569 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 CCNA2P20248 432 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 AQP1P29972 269 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 HLCSP50747 726 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 IL5RAQ01344 420 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 CHRNA6Q15825 494 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 DPH2Q9BQC3 489 aaPredicted RBP14.74□□□□□ -0.05
USP28-214ENST00000545540 ATG10Q9H0Y0 220 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 IL26Q9NPH9 171 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 RASSF1Q9NS23 344 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 PAK1IP1Q9NWT1 392 aaPredicted RBP14.74□□□□□ -0.05
USP28-214ENST00000545540 OPTCQ9UBM4 332 aa14.74□□□□□ -0.05
USP28-214ENST00000545540 ARIH1Q9Y4X5 557 aaPredicted RBP14.74□□□□□ -0.05
USP28-214ENST00000545540 SH3PXD2BA1X283 911 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 FAM92AA1XBS5 289 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 CXCR6O00574 342 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 FUT4P22083 530 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 ITPKAP23677 461 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 SMAD3P84022 425 aaKnown RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 AQP6Q13520 282 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 PWP1Q13610 501 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 DPY19L1Q2PZI1 675 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 TXNDC8Q6A555 127 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 KIAA1841Q6NSI8 718 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 TXNDC11Q6PKC3 985 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 THAP5Q7Z6K1 395 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 C8orf59Q8N0T1 100 aaPredicted RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 MBOAT4Q96T53 435 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 BBS2Q9BXC9 721 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 NUSAP1Q9BXS6 441 aaKnown RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 TMEM165Q9HC07 324 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 GPRC5BQ9NZH0 403 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 IL37Q9NZH6 218 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 VPS51Q9UID3 782 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 PNMA8BQ9ULN7 279 aaPredicted RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 DHRS7Q9Y394 339 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 FOXM1Q08050 763 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 NR1D2Q14995 579 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 USP51Q70EK9 711 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 SPARTQ8N0X7 666 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 RIBC2Q9H4K1 309 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 AMBNQ9NP70 447 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 CRLS1Q9UJA2 301 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 LRFN2Q9ULH4 789 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 KLK8O60259 260 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 BCL10O95999 233 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 CRHBPP24387 322 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 DCKP27707 260 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 STK19P49842 368 aaPredicted RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 PHEXP78562 749 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 CES5AQ6NT32 575 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 DEFB128Q7Z7B8 93 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 PROSER1Q86XN7 944 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 ARL14EPQ8N8R7 260 aaPredicted RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 SMG9Q9H0W8 520 aaKnown RBP14.73□□□□□ -0.05
USP28-214ENST00000545540 CD320Q9NPF0 282 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 SELENONQ9NZV5 590 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 MAGEL2Q9UJ55 1249 aa14.73□□□□□ -0.05
USP28-214ENST00000545540 AGRPO00253 132 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 CLDN11O75508 207 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 MBL2P11226 248 aaPredicted RBP14.72□□□□□ -0.05
USP28-214ENST00000545540 PTGER3P43115 390 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 MAGEA11P43364 429 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 CCL23P55773 120 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 RING1Q06587 406 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 PON2Q15165 354 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 CYP2A13Q16696 494 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 LAIR2Q6ISS4 152 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 TRAF7Q6Q0C0 670 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 VTCN1Q7Z7D3 282 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 SMYD1Q8NB12 490 aa14.72□□□□□ -0.05
USP28-214ENST00000545540 FEM1AQ9BSK4 669 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms