RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 IKZF3Q9UKT9 509 aa5.69□□□□□ -1.5
VPS50-220ENST00000544910 TNS1Q9HBL0 1735 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 HMX2A2RU54 273 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 FAM220BPB1ANY3 271 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CCL16O15467 120 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 COCHO43405 550 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 HTRA2O43464 458 aaPredicted RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 ATG13O75143 517 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RNASEH2AO75792 299 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 CDK14O94921 469 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TRBC1P01850 177 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ITGB1P05556 798 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CYP4B1P13584 511 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PSMA3P25788 255 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 VARSP26640 1264 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 GSSP48637 474 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ALDH9A1P49189 494 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 C1QTNF8P60827 252 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CYP4F8P98187 520 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SEMA3BQ13214 749 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 FAM174BQ3ZCQ3 159 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RBM48Q5RL73 367 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 PERM1Q5SV97 790 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ATG14Q6ZNE5 492 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TRAPPC5Q8IUR0 188 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SLC44A2Q8IWA5 706 aaPredicted RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 ANKFN1Q8N957 763 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ACVR1CQ8NER5 493 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GPR156Q8NFN8 814 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CLP1Q92989 425 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 ZNF382Q96SR6 550 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SLC29A3Q9BZD2 475 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KATNBL1Q9H079 304 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GSTO2Q9H4Y5 243 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CCNB1IP1Q9NPC3 277 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TBCCD1Q9NVR7 557 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RGS17Q9UGC6 210 aaPredicted RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 RAPGEFL1Q9UHV5 662 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PNMA8BQ9ULN7 279 aaPredicted RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 OAZ3Q9UMX2 235 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PRELID1Q9Y255 219 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SAMHD1Q9Y3Z3 626 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 PTGDR2Q9Y5Y4 395 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TRIM43BA6NCK2 446 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SUV39H1O43463 412 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 OR1I1O60431 355 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GPC1P35052 558 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ARSDP51689 593 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 EMX2Q04743 252 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ATP6AP1Q15904 470 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GPR33Q49SQ1 333 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CLLU1OSQ5K130 101 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CPTPQ5TA50 214 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RAET1GQ6H3X3 334 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 MZT2AQ6P582 158 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 BNIPLQ7Z465 357 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ERI1Q8IV48 349 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 TMEM199Q8N511 208 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KDM1BQ8NB78 822 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PROX1Q92786 737 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KCNJ9Q92806 393 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 APOLD1Q96LR9 279 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TSSK3Q96PN8 268 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TRIB3Q96RU7 358 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CGREF1Q99674 301 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 ZDHHC3Q9NYG2 299 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 DPP7Q9UHL4 492 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 COQ6Q9Y2Z9 468 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PSME4Q14997 1843 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PIPSLA2A3N6 862 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 DRGXA6NNA5 263 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PDLIM1O00151 329 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 MANBAO00462 879 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RASAL1O95294 804 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 UGT2B4P06133 528 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 FYNP06241 537 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 SLC10A3P09131 477 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 TCF3P15923 654 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KIR3DL1P43629 444 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 HNMTP50135 292 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 RPS14P62263 151 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 SPIBQ01892 262 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 POM121L1PQ3SYA9 428 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 FBXL19Q6PCT2 694 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 DOK6Q6PKX4 331 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GALNT5Q7Z7M9 940 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 CXorf40AQ8TE69 158 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 GATA6Q92908 595 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 BIRC7Q96CA5 298 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KLHL32Q96NJ5 620 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 HBEGFQ99075 208 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PTPN18Q99952 460 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 EBPLQ9BY08 206 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 YTHDF1Q9BYJ9 559 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 MTIF3Q9H2K0 278 aaKnown RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 EHD3Q9NZN3 535 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 PDP1Q9P0J1 537 aaPredicted RBP5.68□□□□□ -1.5
VPS50-220ENST00000544910 GALPQ9UBC7 116 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 OARD1Q9Y530 152 aa5.68□□□□□ -1.5
VPS50-220ENST00000544910 KPNA3O00505 521 aaPredicted RBP5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms