RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 PTPRDP23468 1912 aa13.74□□□□□ -0.21
LIG1-203ENST00000536218 RAMP2O60895 175 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 GABARAPO95166 117 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PIRTP0C851 137 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 MLLT3P42568 568 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 MAGEA11P43364 429 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 TRIP4Q15650 581 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 ZNF181Q2M3W8 571 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 Q5BKY6 102 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 RETREG3Q86VR2 466 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ZC3HC1Q86WB0 502 aaKnown RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 RNF135Q8IUD6 432 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 FBXO22Q8NEZ5 403 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 SPPL2BQ8TCT7 592 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 DYNC2LI1Q8TCX1 351 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 FAR1Q8WVX9 515 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 SNAPC3Q92966 411 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 INTS10Q9NVR2 710 aaKnown RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 MID2Q9UJV3 735 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 A0A0G2JMP0 313 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 H0YAE9 185 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 TBC1D4O60343 1298 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 FKTNO75072 461 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 MSL3P1P0C860 447 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 M6PRP20645 277 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 UQCRC1P31930 480 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CASP2P42575 452 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 VEGFBP49765 207 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ZNF33AQ06730 810 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 IHHQ14623 411 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 MICU2Q8IYU8 434 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 NLGN4XQ8N0W4 816 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 AFAP1L2Q8N4X5 818 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 OR6P1Q8NGX9 317 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PHF10Q8WUB8 498 aaKnown RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 ACAT2Q9BWD1 397 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 C12orf10Q9HB07 376 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PAK1IP1Q9NWT1 392 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 CASP8AP2Q9UKL3 1982 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 VWA8A3KMH1 1905 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CACNG3O60359 315 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 NOBOXO60393 691 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PRKD3O94806 890 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 GJB5O95377 273 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 MPOP05164 745 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 IRF1P10914 325 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CTRB1P17538 263 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ATF6P18850 670 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CBLP22681 906 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PKLRP30613 574 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 HTR3AP46098 478 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ARSFP54793 590 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PYCR3Q53H96 274 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CTRB2Q6GPI1 263 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ERAP2Q6P179 960 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 RANBP10Q6VN20 620 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 IDO2Q6ZQW0 420 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 GALNT7Q86SF2 657 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 UMODL1-AS1Q8N2C9 162 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 CHDHQ8NE62 594 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 DNAJB14Q8TBM8 379 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 ELMO2Q96JJ3 720 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 PRDM5Q9NQX1 630 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 TLR9Q9NR96 1032 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 GKN1Q9NS71 199 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 UXTQ9UBK9 157 aaPredicted RBP13.73□□□□□ -0.21
LIG1-203ENST00000536218 SARDHQ9UL12 918 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 KCTD3Q9Y597 815 aa13.73□□□□□ -0.21
LIG1-203ENST00000536218 A0A0D9SEW6 157 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SAGE2PA6NJ88 616 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SLC38A8A6NNN8 435 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 TFECO14948 347 aaPredicted RBP13.72□□□□□ -0.21
LIG1-203ENST00000536218 DLX3O60479 287 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 ARHGEF15O94989 841 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SEMA3DO95025 777 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 PEX11BO96011 259 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 ADRA1AP35348 466 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SLC1A2P43004 574 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 CLK1P49759 484 aaKnown RBP13.72□□□□□ -0.21
LIG1-203ENST00000536218 DEFA1P59665 94 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 DEFA3P59666 94 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 EMX1Q04741 257 aaPredicted RBP13.72□□□□□ -0.21
LIG1-203ENST00000536218 BPTFQ12830 3046 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 PTPRCAPQ14761 206 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 ZNF789Q5FWF6 425 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 FAM45BPQ6NSW5 357 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 TCAIMQ8N3R3 496 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 FAM45AQ8TCE6 357 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 BDH2Q9BUT1 245 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SLIRPQ9GZT3 109 aaKnown RBP13.72□□□□□ -0.21
LIG1-203ENST00000536218 RNF208Q9H0X6 261 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SLA2Q9H6Q3 261 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 SMURF2Q9HAU4 748 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 PRDM8Q9NQV8 689 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 XPR1Q9UBH6 696 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 MYO16Q9Y6X6 1858 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 NEMP2A6NFY4 417 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 RBP1P09455 135 aa13.72□□□□□ -0.21
LIG1-203ENST00000536218 C1QTNF8P60827 252 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms