RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TRIM64CA6NLI5 447 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 BNIP3LO60238 219 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 ALBP02768 609 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 HNRNPCP07910 306 aaKnown RBP eCLIP12.89□□□□□ -0.351e-7■■■□□ 17.1
LDLR-203ENST00000535915 SERPINA4P29622 427 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 MAPK8P45983 427 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GPR33Q49SQ1 333 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 DNAJC14Q6Y2X3 702 aaPredicted RBP12.89□□□□□ -0.35
LDLR-203ENST00000535915 ZSWIM9Q86XI8 627 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 SLAIN1Q8ND83 568 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 OR10A6Q8NH74 314 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GTF2H4Q92759 462 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 ABCG8Q9H221 673 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 NTN4Q9HB63 628 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 LRTM1Q9HBL6 345 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 ZNHIT2Q9UHR6 403 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 NPIPB15A6NHN6 443 aaPredicted RBP12.88□□□□□ -0.35
LDLR-203ENST00000535915 CKMP06732 381 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 EBLN1P0CF75 366 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CYP4F8P98187 520 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 LMAN2Q12907 356 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 RAB33AQ14088 237 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CRY1Q16526 586 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 ZIK1Q3SY52 487 aaPredicted RBP12.88□□□□□ -0.35
LDLR-203ENST00000535915 ZBED5Q49AG3 693 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 SPANXN4Q5MJ08 99 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 RGL4Q8IZJ4 473 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 AADATQ8N5Z0 425 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 KRTCAP2Q8N6L1 136 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 GPR26Q8NDV2 337 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 FBXO30Q8TB52 745 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 TMBIM1Q969X1 311 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 ASIC4Q96FT7 647 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 NTMT1Q9BV86 223 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CREBZFQ9NS37 354 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 PKD2L2Q9NZM6 624 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CIDEBQ9UHD4 219 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 TRPS1Q9UHF7 1281 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 STK16O75716 305 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 WDR47O94967 919 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CXCL10P02778 98 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 URODP06132 367 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 PGRP06401 933 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CDK4P11802 303 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CD70P32970 193 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 GGT5P36269 586 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 MTHFRP42898 656 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CSNK1DP48730 415 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 ATN1P54259 1190 aaPredicted RBP12.88□□□□□ -0.35
LDLR-203ENST00000535915 ARSFP54793 590 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CYP4F3Q08477 520 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 DGKKQ5KSL6 1271 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 FAM117BQ6P1L5 589 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 TRIM46Q7Z4K8 759 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CLEC4FQ8N1N0 589 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 CLHC1Q8NHS4 586 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 ADAMTS16Q8TE57 1224 aa12.88□□□□□ -0.35
LDLR-203ENST00000535915 MRPL17Q9NRX2 175 aaKnown RBP12.88□□□□□ -0.35
LDLR-203ENST00000535915 TRIM64A6NGJ6 449 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 MANBAO00462 879 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ZNF821O75541 412 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 OLFM2O95897 454 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 IL6P05231 212 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ANXA5P08758 320 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 GABRR2P28476 465 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 NSG1P42857 185 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ADARB1P78563 741 aaKnown RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 CPSF6Q16630 551 aaKnown RBP eCLIP12.87□□□□□ -0.35
LDLR-203ENST00000535915 SMU1Q2TAY7 513 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 STK32CQ86UX6 486 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 BBS7Q8IWZ6 715 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 FAM217AQ8IXS0 508 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 TCEAL8Q8IYN2 117 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 LEMD2Q8NC56 503 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 GLB1L3Q8NCI6 653 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 OR2AP1Q8NGE2 309 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 UBTD2Q8WUN7 234 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ISOC1Q96CN7 298 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ZNF558Q96NG5 402 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 C19orf43Q9BQ61 176 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 TBCDQ9BTW9 1192 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 NPLQ9BXD5 320 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 UGT2B28Q9BY64 529 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 IKZF5Q9H5V7 419 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 IL21Q9HBE4 155 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 RDH14Q9HBH5 336 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ABCB8Q9NUT2 735 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ARL15Q9NXU5 204 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 KIAA1522Q9P206 1035 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 CFAP97Q9P2B7 532 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 LIMD1Q9UGP4 676 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 EBF1Q9UH73 591 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ADGRE2Q9UHX3 823 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 PCDHGA11Q9Y5H2 935 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 MKI67P46013 3256 aaKnown RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 UPK1AO00322 258 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 CLDN9O95484 217 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 YAP1P46937 504 aaKnown RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 RPIAP49247 311 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ALDH3A2P51648 485 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms