RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 THOC5Q13769 683 aaKnown RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 FASTKD3Q14CZ7 662 aaKnown RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 PLCL1Q15111 1095 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 WHAMMP3Q1A5X7 153 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 SYTL3Q4VX76 610 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 SNAP47Q5SQN1 464 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PLEKHS1Q5SXH7 462 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 GALNT7Q86SF2 657 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 KCNMB4Q86W47 210 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 DTX1Q86Y01 620 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ADGRF3Q8IZF5 1079 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 C2CD4AQ8NCU7 369 aaPredicted RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 BBOF1Q8ND07 529 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ZNF248Q8NDW4 579 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 OR4E2Q8NGC2 313 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 CALML6Q8TD86 181 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 LCN9Q8WX39 176 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 SEC14L1Q92503 715 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 USP7Q93009 1102 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PMEPA1Q969W9 287 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 TAAR9Q96RI9 348 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 CD180Q99467 661 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 FAM167BQ9BTA0 163 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 DDA1Q9BW61 102 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 FBXO6Q9NRD1 293 aaPredicted RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 KLHL42Q9P2K6 505 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ZC3H7BQ9UGR2 993 aaKnown RBP12.61□□□□□ -0.39
VPS28-216ENST00000533806 KLHL3Q9UH77 587 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ICKQ9UPZ9 632 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 ASF1AQ9Y294 204 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 CACNA1BQ00975 2339 aa12.61□□□□□ -0.39
VPS28-216ENST00000533806 PIKFYVEQ9Y2I7 2098 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 IGHV5-51A0A0C4DH38 117 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 EFCAB7A8K855 629 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 NDC80O14777 642 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 URI1O94763 535 aaPredicted RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 MATN4O95460 622 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 NELFEP18615 380 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 ATP5DP30049 168 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 KPNA2P52292 529 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 MAPK10P53779 464 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 CSE1LP55060 971 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 KRT33BQ14525 404 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 TRADDQ15628 312 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 HP1BP3Q5SSJ5 553 aaPredicted RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 TEDDM1Q5T9Z0 273 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 IRGCQ6NXR0 463 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 TRMT10BQ6PF06 316 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 CNSTQ6PJW8 725 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 UNC5DQ6UXZ4 953 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 FAM92BQ6ZTR7 304 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 OTOAQ7RTW8 1153 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 AMIGO1Q86WK6 493 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 OOSP2Q86WS3 158 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 RASGRP3Q8IV61 690 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 CARFQ8N187 725 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 OTUD6BQ8N6M0 293 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 GIMAP7Q8NHV1 300 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 FLVCR1-AS1Q8TAF5 88 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 KCNJ9Q92806 393 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 ART4Q93070 314 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 CERS2Q96G23 380 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 SLC30A3Q99726 388 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 MAP3K3Q99759 626 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 HGH1Q9BTY7 390 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 PITPNM3Q9BZ71 974 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 DPH1Q9BZG8 443 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 TRIT1Q9H3H1 467 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 SRMSQ9H3Y6 488 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 IARS2Q9NSE4 1012 aaKnown RBP12.6□□□□□ -0.39
VPS28-216ENST00000533806 MOCS1Q9NZB8 636 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 POLG2Q9UHN1 485 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 POMT2Q9UKY4 750 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 CHMP2BQ9UQN3 213 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 MRFAP1Q9Y605 127 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 ZFYVE26Q68DK2 2539 aa12.6□□□□□ -0.39
VPS28-216ENST00000533806 AHCTF1Q8WYP5 2266 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 TLCD2A6NGC4 264 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 KIF2AO00139 706 aaPredicted RBP12.59□□□□□ -0.39
VPS28-216ENST00000533806 BTN3A1O00481 513 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 AHSGP02765 367 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 POLR2CP19387 275 aaPredicted RBP12.59□□□□□ -0.39
VPS28-216ENST00000533806 ITPKBP27987 946 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 RAB15P59190 212 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 MPP1Q00013 466 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 TLE3Q04726 772 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 CKAP4Q07065 602 aaKnown RBP12.59□□□□□ -0.39
VPS28-216ENST00000533806 ABRQ12979 859 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 PDIA2Q13087 525 aaKnown RBP12.59□□□□□ -0.39
VPS28-216ENST00000533806 CLN3Q13286 438 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 TUBB2AQ13885 445 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 TMED2Q15363 201 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 KYNUQ16719 465 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 CACHD1Q5VU97 1274 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 ZDHHC24Q6UX98 284 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 KIAA0408Q6ZU52 694 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 KMT5CQ86Y97 462 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 SPNS2Q8IVW8 549 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 SPACA3Q8IXA5 215 aa12.59□□□□□ -0.39
VPS28-216ENST00000533806 MMGT1Q8N4V1 131 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms