RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 UNC5BQ8IZJ1 945 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 BMPERQ8N8U9 685 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 C2CD4AQ8NCU7 369 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 OR52E1Q8NGJ3 308 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 OR5AR1Q8NGP9 310 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 OR5K2Q8NHB8 316 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 GABPB2Q8TAK5 448 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 LCN9Q8WX39 176 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 CERS2Q96G23 380 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 CD180Q99467 661 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 DPH5Q9H2P9 285 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 ZNF768Q9H5H4 540 aaKnown RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 PLAC1Q9HBJ0 212 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 FBXO6Q9NRD1 293 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-208ENST00000532560 SEMA5BQ9P283 1151 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 POLG2Q9UHN1 485 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 FBXO5Q9UKT4 447 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 DMXL2Q8TDJ6 3036 aa14.63□□□□□ -0.07
CPSF1-208ENST00000532560 A0A087WV48 116 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 OR6C74A6NCV1 312 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 TLCD2A6NGC4 264 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 EFCAB7A8K855 629 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 A8MU76 341 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 AGRPO00253 132 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 MATN2O00339 956 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 NIPSNAP2O75323 286 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 FGF3P11487 239 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 CCL4P13236 92 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 PKMP14618 531 aaKnown RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 EIF2S3P41091 472 aaKnown RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 MAPK10P53779 464 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 CSE1LP55060 971 aaKnown RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 PPP1CAP62136 330 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 MPP1Q00013 466 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 CTBP1Q13363 440 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 GBX1Q14549 363 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 NAA30Q147X3 362 aaPredicted RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 UNC5DQ6UXZ4 953 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 GALNT7Q86SF2 657 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 CARFQ8N187 725 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 ZNF248Q8NDW4 579 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 PHC3Q8NDX5 983 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 KCNJ9Q92806 393 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 CFAP36Q96G28 342 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 TAAR9Q96RI9 348 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 PHACTR1Q9C0D0 580 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 SRMSQ9H3Y6 488 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 LATS2Q9NRM7 1088 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 IARS2Q9NSE4 1012 aaKnown RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 HRASLS2Q9NWW9 162 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 SIDT1Q9NXL6 827 aaKnown RBP14.62□□□□□ -0.07
CPSF1-208ENST00000532560 PCDHGA3Q9Y5H0 932 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 COMMD10Q9Y6G5 202 aa14.62□□□□□ -0.07
CPSF1-208ENST00000532560 WDFY3Q8IZQ1 3526 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 C9orf172C9J069 976 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 E5RI56 91 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 RASSF9O75901 435 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 KRT37O76014 449 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 RPN2P04844 631 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ERVK-10P10266 1014 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 SLC5A2P31639 672 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 RAB15P59190 212 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 CAV1Q03135 178 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 PDIA2Q13087 525 aaKnown RBP14.61□□□□□ -0.07
CPSF1-208ENST00000532560 PRKAA1Q13131 559 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 FASTKD3Q14CZ7 662 aaKnown RBP14.61□□□□□ -0.07
CPSF1-208ENST00000532560 HP1BP3Q5SSJ5 553 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-208ENST00000532560 TMEM164Q5U3C3 297 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ARMC6Q6NXE6 501 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 C8orf74Q6P047 294 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ZNF549Q6P9A3 640 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 FAM92BQ6ZTR7 304 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 KIAA0408Q6ZU52 694 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 AMIGO1Q86WK6 493 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 FAM129CQ86XR2 697 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 DCUN1D3Q8IWE4 304 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ZBTB2Q8N680 514 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 FBXO36Q8NEA4 188 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 OR4E2Q8NGC2 313 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 GSDMBQ8TAX9 411 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 KLHL6Q8WZ60 621 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 USP7Q93009 1102 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 DDA1Q9BW61 102 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 CCDC68Q9H2F9 335 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 OCIAD1Q9NX40 245 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 KLHL42Q9P2K6 505 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 POMT2Q9UKY4 750 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ICKQ9UPZ9 632 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 MED16Q9Y2X0 877 aa14.61□□□□□ -0.07
CPSF1-208ENST00000532560 URB1O60287 2271 aaKnown RBP14.61□□□□□ -0.07
CPSF1-208ENST00000532560 ADAMTS20P59510 1910 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CFAP47Q6ZTR5 3102 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 EIF3HO15372 352 aaKnown RBP eCLIP14.6□□□□□ -0.074e-10■□□□□ 9.1
CPSF1-208ENST00000532560 RRP8O43159 456 aaKnown RBP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 KIF1CO43896 1103 aaKnown RBP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 KDM1AO60341 852 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 PRAMEF10O60809 474 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 F7P08709 466 aaPredicted RBP14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CHRM3P20309 590 aa14.6□□□□□ -0.07
CPSF1-208ENST00000532560 CD82P27701 267 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms