RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 WIPF3A6NGB9 483 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 C2orf74A8MZ97 194 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 CFAP99D6REC4 459 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 IFRD1O00458 451 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-202ENST00000527827 CCL22O00626 93 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 MAP3K7O43318 606 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 CBFA2T2O43439 604 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 HBQ1P09105 142 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 ITGALP20701 1170 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 AGXTP21549 392 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 OTX2P32243 289 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 BOP1Q14137 746 aaKnown RBP22.81■■□□□ 1.24
CPSF1-202ENST00000527827 VWA5B1Q5TIE3 1220 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 DENND5AQ6IQ26 1287 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 SARM1Q6SZW1 724 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 KRT35Q92764 455 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 TCTN2Q96GX1 697 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 C19orf43Q9BQ61 176 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 FAM60AQ9NP50 221 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 ACTR10Q9NZ32 417 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 ERRFI1Q9UJM3 462 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-202ENST00000527827 PADI2Q9Y2J8 665 aa22.81■■□□□ 1.24
CPSF1-202ENST00000527827 H3BMH7 237 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 HCRTR1O43613 425 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 SNRNP200O75643 2136 aaKnown RBP22.8■■□□□ 1.24
CPSF1-202ENST00000527827 TPM1P09493 284 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 CBSLP0DN79 551 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 COL8A1P27658 744 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 CBSP35520 551 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 HADHAP40939 763 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 PRKG2Q13237 762 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 NR6A1Q15406 480 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 ANKRD20A2Q5SQ80 823 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 ANKRD20A1Q5TYW2 823 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 ANKRD20A3Q5VUR7 823 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 SPESP1Q6UW49 350 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 HGH1Q9BTY7 390 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 ASF1BQ9NVP2 202 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 ZDHHC3Q9NYG2 299 aa22.8■■□□□ 1.24
CPSF1-202ENST00000527827 AAR2Q9Y312 384 aaKnown RBP22.8■■□□□ 1.24
CPSF1-202ENST00000527827 TRBV5-4A0A0C4DH59 114 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 LDB2O43679 373 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 CBX6O95503 412 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 CLDN1O95832 211 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 LDLRP01130 860 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 GABRA4P48169 554 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 SSPNQ14714 243 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 ZIC1Q15915 447 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 KYNUQ16719 465 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 GPR33Q49SQ1 333 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 MLIPQ5VWP3 458 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 ZNF787Q6DD87 383 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 MAMDC2Q7Z304 686 aaPredicted RBP22.79■■□□□ 1.24
CPSF1-202ENST00000527827 IQCKQ8N0W5 287 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 C19orf47Q8N9M1 422 aaKnown RBP22.79■■□□□ 1.24
CPSF1-202ENST00000527827 ACTL9Q8TC94 416 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 TFGQ92734 400 aaPredicted RBP22.79■■□□□ 1.24
CPSF1-202ENST00000527827 IP6K3Q96PC2 410 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 ICKQ9UPZ9 632 aa22.79■■□□□ 1.24
CPSF1-202ENST00000527827 PRSS56P0CW18 603 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 ACRV1P26436 265 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 MC4RP32245 332 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 RPA4Q13156 261 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 PRPSAP1Q14558 356 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 DCAF10Q5QP82 559 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 C1orf189Q5VU69 101 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 TRIM73Q86UV7 250 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 SERPINA9Q86WD7 417 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 GPR135Q8IZ08 494 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 CISD2Q8N5K1 135 aaKnown RBP22.78■■□□□ 1.24
CPSF1-202ENST00000527827 DNAJC1Q96KC8 554 aaKnown RBP22.78■■□□□ 1.24
CPSF1-202ENST00000527827 GBP5Q96PP8 586 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 SPRTNQ9H040 489 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-202ENST00000527827 ARNT2Q9HBZ2 717 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 CELSR2Q9HCU4 2923 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 B3GNT3Q9Y2A9 372 aa22.78■■□□□ 1.24
CPSF1-202ENST00000527827 MDC1Q14676 2089 aaKnown RBP22.78■■□□□ 1.24
CPSF1-202ENST00000527827 CRYBG3Q68DQ2 2970 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 PCM1Q15154 2024 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 CTSBP07858 339 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 OTUD4Q01804 1114 aaKnown RBP22.77■■□□□ 1.24
CPSF1-202ENST00000527827 SPARCL1Q14515 664 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 MYBPC3Q14896 1274 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 DEFB110Q30KQ9 67 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 CRB2Q5IJ48 1285 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 RHBDD2Q6NTF9 364 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 C11orf63Q6NUN7 778 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 IGFL3Q6UXB1 125 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 GALNT16Q8N428 558 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 CLDN19Q8N6F1 224 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 CCDC110Q8TBZ0 833 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 FER1L6-AS2Q96M78 137 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 OR2A14Q96R47 310 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 RANBP9Q96S59 729 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 TBL1YQ9BQ87 522 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 C17orf62Q9BQA9 187 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 ZNF552Q9H707 407 aaPredicted RBP22.77■■□□□ 1.24
CPSF1-202ENST00000527827 VPS37BQ9H9H4 285 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 TFR2Q9UP52 801 aa22.77■■□□□ 1.24
CPSF1-202ENST00000527827 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms