RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 TEAD4Q15561 434 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 PEAR1Q5VY43 1037 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 UBE2R2Q712K3 238 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 ARMCX6Q7L4S7 300 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 NUDCD3Q8IVD9 361 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 C10orf107Q8IVU9 208 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 PHACTR4Q8IZ21 702 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 SKA2Q8WVK7 121 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 TSACCQ96A04 125 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 TRIM54Q9BYV2 358 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 PARVBQ9HBI1 364 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 FAM86C1Q9NVL1 165 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 OXSMQ9NWU1 459 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 TSR3Q9UJK0 312 aaKnown RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 ADAMTS6Q9UKP5 1117 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 PNMA8BQ9ULN7 279 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 DNAJC16Q9Y2G8 782 aa12.76□□□□□ -0.37
CPNE3-205ENST00000522240 TP53BP1Q12888 1972 aaPredicted RBP12.76□□□□□ -0.37
CPNE3-205ENST00000522240 STX16-NPEPL1H3BU86 382 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 UBXN8O00124 270 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 IFRD1O00458 451 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 STX16O14662 325 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 FFAR2O15552 330 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 HRO43593 1189 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 TRIM13O60858 407 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 CSF2P04141 144 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 S100BP04271 92 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 RPN2P04844 631 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 SERPINE1P05121 402 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 FGF3P11487 239 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 NEFHP12036 1026 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 GFAPP14136 432 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 NME1P15531 152 aaKnown RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 GNSP15586 552 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 IDSP22304 550 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 GRK2P25098 689 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 SERPINB5P36952 375 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 KCNC1P48547 511 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 DHPSP49366 369 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 NAA20P61599 178 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 ILF3Q12906 894 aaKnown RBP eCLIP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 SRSF5Q13243 272 aaKnown RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 PHKG1Q16816 387 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 ATG16L1Q676U5 607 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 WASH2PQ6VEQ5 465 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 CEP68Q76N32 757 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 RAB44Q7Z6P3 723 aaPredicted RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 HID1Q8IV36 788 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 TCAIMQ8N3R3 496 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 FBXO39Q8N4B4 442 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 OR6Y1Q8NGX8 325 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 GPBAR1Q8TDU6 330 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 LRRC8CQ8TDW0 803 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 UBTD2Q8WUN7 234 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 EXT2Q93063 718 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 L3HYPDHQ96EM0 354 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 RMDN2Q96LZ7 410 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 GSDMCQ9BYG8 508 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 OSGEPL1Q9H4B0 414 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 WASH6PQ9NQA3 447 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 APOBEC3BQ9UH17 382 aaKnown RBP12.75□□□□□ -0.37
CPNE3-205ENST00000522240 PCOLCE2Q9UKZ9 415 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 PDE10AQ9Y233 779 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 KCNK6Q9Y257 313 aa12.75□□□□□ -0.37
CPNE3-205ENST00000522240 ZFC3H1O60293 1989 aaKnown RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 WDR91A4D1P6 747 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 NEMP2A6NFY4 417 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ARHGEF33A8MVX0 844 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 SNX2O60749 519 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 C1orf105O95561 183 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ANXA5P08758 320 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 BGNP21810 368 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ITPKAP23677 461 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 LSP1P33241 339 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ALDH18A1P54886 795 aaKnown RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 C21orf59P57076 290 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 GNGT1P63211 74 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 CTBSQ01459 385 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 SETDB1Q15047 1291 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 CHI3L2Q15782 390 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 SULT1C3Q6IMI6 304 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 CAPRIN2Q6IMN6 1127 aaKnown RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 METTL2BQ6P1Q9 378 aaKnown RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 RABEPKQ7Z6M1 372 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 SPATS2Q86XZ4 545 aaKnown RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 DCUN1D3Q8IWE4 304 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 PTGR2Q8N8N7 351 aaPredicted RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 PPP1R14CQ8TAE6 165 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 MAGEC3Q8TD91 643 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 MCOLN3Q8TDD5 553 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ZNF75CPQ92670 426 aaPredicted RBP12.74□□□□□ -0.37
CPNE3-205ENST00000522240 DLG3Q92796 817 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 C1QTNF3Q9BXJ4 246 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 ZDHHC5Q9C0B5 715 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 WWP1Q9H0M0 922 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 TMEM168Q9H0V1 697 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 MANSC1Q9H8J5 431 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 NCKIPSDQ9NZQ3 722 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 CD274Q9NZQ7 290 aa12.74□□□□□ -0.37
CPNE3-205ENST00000522240 PILRBQ9UKJ0 227 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms