RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 C1orf52Q8N6N3 182 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 MAGEB6Q8N7X4 407 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 MITD1Q8WV92 249 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TFB1MQ8WVM0 346 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 DEDD2Q8WXF8 326 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SLC7A3Q8WY07 619 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SNAPC3Q92966 411 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 HLA-CQ95604 372 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 CHFRQ96EP1 664 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SLC47A1Q96FL8 570 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SMARCD1Q96GM5 515 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 MYO19Q96H55 970 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 STRBPQ96SI9 672 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 AARSD1Q9BTE6 412 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 CENPOQ9BU64 300 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 WWTR1Q9GZV5 400 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 DPEP2Q9H4A9 486 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 LIN7BQ9HAP6 207 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 C11orf16Q9NQ32 467 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 RAB6BQ9NRW1 208 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 TOPORSQ9NS56 1045 aaPredicted RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 GPRC5DQ9NZD1 345 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SLC2A6Q9UGQ3 507 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 SRRDQ9UH36 339 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 FBXL4Q9UKA2 621 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 RNF112Q9ULX5 631 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 MINPP1Q9UNW1 487 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 ERVK-19Q9WJR5 959 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 RBMX2Q9Y388 322 aaKnown RBP3.53□□□□□ -1.85
USP53-205ENST00000509769 ZNF175Q9Y473 711 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 KPTNQ9Y664 436 aa3.53□□□□□ -1.85
USP53-205ENST00000509769 C4AP0C0L4 1744 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FAM221BA6H8Z2 402 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 OR6C6A6NF89 314 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 E9PI62 339 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NDUFS8O00217 210 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CCNT2O60583 730 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 ENTPD5O75356 428 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 UBXN7O94888 489 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CD48P09326 243 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CSF3P09919 207 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FGFR1P11362 822 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ATP1A3P13637 1013 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PHKG2P15735 406 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FGF7P21781 194 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 IGFBP5P24593 272 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 GNA15P30679 374 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SLC16A2P36021 539 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TECP42680 631 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 GRIA4P48058 902 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PITPNBP48739 271 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SLC16A1P53985 500 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ACTA2P62736 377 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ACTC1P68032 377 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ACTA1P68133 377 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 RPL24P83731 157 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 GCNT1Q02742 428 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SRSF11Q05519 484 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 PPATQ06203 517 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ITPK1Q13572 414 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NFIXQ14938 502 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 DLGAP5Q15398 846 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NTRK3Q16288 839 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TBC1D25Q3MII6 688 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FNDC3BQ53EP0 1204 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 IFI44LQ53G44 452 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ZC3H12AQ5D1E8 599 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 PIGGQ5H8A4 983 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 ALG10BQ5I7T1 473 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 FGD3Q5JSP0 725 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 OGFRL1Q5TC84 451 aaPredicted RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 AGAP7PQ5VUJ5 663 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PDE12Q6L8Q7 609 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 KCNT2Q6UVM3 1135 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CYB5R4Q7L1T6 521 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 MAEAQ7L5Y9 396 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TMC8Q8IU68 726 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 C7orf61Q8IZ16 206 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 LGI2Q8N0V4 545 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SLC34A3Q8N130 599 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NKAPQ8N5F7 415 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 ZNF709Q8N972 641 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.52□□□□□ -1.855e-6■■■■■ 56.5
USP53-205ENST00000509769 SPPL2AQ8TCT8 520 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CD300LFQ8TDQ1 290 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 NPRL2Q8WTW4 380 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 MYLIPQ8WY64 445 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TTC9Q92623 222 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 SPATA13Q96N96 652 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 EYA1Q99502 592 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 LGR4Q9BXB1 951 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 DCSTAMPQ9H295 470 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 OR52A5Q9H2C5 316 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 CHRDQ9H2X0 955 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 TPK1Q9H3S4 243 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 BRD7Q9NPI1 651 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 IMP3Q9NV31 184 aaKnown RBP3.52□□□□□ -1.85
USP53-205ENST00000509769 RNF186Q9NXI6 227 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 KCNS2Q9ULS6 477 aa3.52□□□□□ -1.85
USP53-205ENST00000509769 COLQQ9Y215 455 aaPredicted RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms