RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 HHIPQ96QV1 700 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 ZNF382Q96SR6 550 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 SLC12A9Q9BXP2 914 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 TRIM39Q9HCM9 518 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 SLC40A1Q9NP59 571 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 ITM2CQ9NQX7 267 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 PTBP2Q9UKA9 531 aaKnown RBP10.05□□□□□ -0.8
HDAC3-214ENST00000495485 PCTPQ9UKL6 214 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 FIS1Q9Y3D6 152 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 FADS3Q9Y5Q0 445 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 DNMT3AQ9Y6K1 912 aaPredicted RBP10.05□□□□□ -0.8
HDAC3-214ENST00000495485 LAMA1P25391 3075 aa10.05□□□□□ -0.8
HDAC3-214ENST00000495485 USP34Q70CQ2 3546 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 GPR39O43194 453 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CCNT2O60583 730 aaKnown RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MMP20O60882 483 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 LRP3O75074 770 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SKAP2O75563 359 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 STK16O75716 305 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 PCDH8O95206 1070 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SIX3O95343 332 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 LMNAP02545 664 aaKnown RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 LBPP18428 481 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 NDUFV2P19404 249 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 COL9A1P20849 921 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 EPHA3P29320 983 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 HMOX2P30519 316 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CDH13P55290 713 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SH3BP2P78314 561 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 B4GALNT1Q00973 533 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CNTN1Q12860 1018 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 KLF10Q13118 480 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MAD2L1Q13257 205 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SGCGQ13326 291 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 RIPK1Q13546 671 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 GTF2H2Q13888 395 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CYLC2Q14093 348 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SQLEQ14534 574 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 GBX1Q14549 363 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 AGERQ15109 404 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 RPS6KA2Q15349 733 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 BCL7AQ4VC05 210 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 VWA5B1Q5TIE3 1220 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 KANK2Q63ZY3 851 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 KIAA1161Q6NSJ0 714 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 KIAA1211LQ6NV74 962 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 GTF2H2CQ6P1K8 395 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 NEK5Q6P3R8 708 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 TMEM220Q6QAJ8 160 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SBSNQ6UWP8 590 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 C16orf89Q6UX73 402 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CYHR1Q6ZMK1 362 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 DET1Q7L5Y6 550 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MAVSQ7Z434 540 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SPATA19Q7Z5L4 167 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MILR1Q7Z6M3 343 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 PARP9Q8IXQ6 854 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 DDIASQ8IXT1 998 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 HDDC3Q8N4P3 179 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 AGAP11Q8TF27 550 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 FAM131CQ96AQ9 280 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SLC7A6OSQ96CW6 309 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 HIC2Q96JB3 615 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SERPINI1Q99574 410 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 RTKNQ9BST9 563 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 TBC1D10AQ9BXI6 508 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CD244Q9BZW8 370 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MKRN2Q9H000 416 aaKnown RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SLC32A1Q9H598 525 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 SEMA4BQ9NPR2 832 aaPredicted RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 MRPL40Q9NQ50 206 aaKnown RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 KLC4Q9NSK0 619 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 ARL15Q9NXU5 204 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 UTP6Q9NYH9 597 aaKnown RBP10.04□□□□□ -0.8
HDAC3-214ENST00000495485 ARMCX1Q9P291 453 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 BCAP29Q9UHQ4 241 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 PRDM4Q9UKN5 801 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 PCDHGA5Q9Y5G8 931 aa10.04□□□□□ -0.8
HDAC3-214ENST00000495485 CEP250Q9BV73 2442 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 LRRC72A6NJI9 287 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 OR2AG2A6NM03 316 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 FADS2P1A8MWK0 482 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 K7EPI3 171 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 E2F3O00716 465 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 SDHDO14521 159 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 MID1O15344 667 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 KCNJ13O60928 360 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 NDUFS2O75306 463 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 RASSF9O75901 435 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 SLCO2B1O94956 709 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 WDR47O94967 919 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 GUCA1CO95843 209 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 KRT16P08779 473 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 EBLN1P0CF75 366 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 COX4I1P13073 169 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 HGFP14210 728 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 CD6P30203 668 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 GGT5P36269 586 aa10.03□□□□□ -0.8
HDAC3-214ENST00000495485 WASP42768 502 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms