RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CSPG5O95196 566 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 NGFP01138 241 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 GRAPQ13588 217 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 KCNC3Q14003 757 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 SLC25A30Q5SVS4 291 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 ZNF343Q6P1L6 599 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 Q6ZR54 194 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 ATG9AQ7Z3C6 839 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 SCYL3Q8IZE3 742 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 OMA1Q96E52 524 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 HRH4Q9H3N8 390 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 NSMCE4AQ9NXX6 385 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 PTTG2Q9NZH5 202 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 COQ3Q9NZJ6 369 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 MAN1B1Q9UKM7 699 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 EXO1Q9UQ84 846 aaKnown RBP3.3□□□□□ -1.88
VPS50-219ENST00000495039 RABGAP1Q9Y3P9 1069 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 IGLV3-10A0A075B6K4 115 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 LRRC72A6NJI9 287 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 K7ENM7 598 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 PLK4O00444 970 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 CTDSP2O14595 271 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 ZBTB43O43298 467 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 PLPP2O43688 288 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 MITFO75030 526 aaPredicted RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 WISP2O76076 250 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 PORP16435 677 aaPredicted RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 HRH2P25021 359 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 EPS8Q12929 822 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 MEP1AQ16819 746 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 FASTKD1Q53R41 847 aaKnown RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 C2CD6Q53TS8 623 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 TPRG1Q6ZUI0 275 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 PCGF5Q86SE9 256 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 ZNF584Q8IVC4 421 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 MCEMP1Q8IX19 187 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 SLC5A8Q8N695 610 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 POC5Q8NA72 575 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 SLC38A9Q8NBW4 561 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 OR2T12Q8NG77 320 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 JAKMIP2Q96AA8 810 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 LRRC59Q96AG4 307 aaKnown RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 PAG1Q9NWQ8 432 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 TRMT1Q9NXH9 659 aaKnown RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 ARHGEF38Q9NXL2 777 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 SEC63Q9UGP8 760 aaKnown RBP3.29□□□□□ -1.88
VPS50-219ENST00000495039 TMEM5Q9Y2B1 443 aa3.29□□□□□ -1.88
VPS50-219ENST00000495039 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.28□□□□□ -1.88
VPS50-219ENST00000495039 J3QR06 171 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 GPR137BO60478 399 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 ZNF217O75362 1048 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 GH2P01242 217 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 DUX4L4P0CJ87 422 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 SAT1P21673 171 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 EPHA2P29317 976 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 ACTN2P35609 894 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 SLC15A1P46059 708 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 CTSCP53634 463 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 CD81P60033 236 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 PPP2R2BQ00005 443 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 MS4A2Q01362 244 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 SP3Q02447 781 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 TEAD2Q15562 447 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 NDUFAF5Q5TEU4 345 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 BRINP3Q76B58 766 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 PM20D2Q8IYS1 436 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 GCSAMQ8N6F7 178 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 SLC47A1Q96FL8 570 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 MAGED4Q96JG8 741 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 DACH2Q96NX9 599 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 DDOQ99489 341 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 TEX12Q9BXU0 123 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 OSGEPL1Q9H4B0 414 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 DNAJC18Q9H819 358 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 PCDHGB4Q9UN71 923 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 B3GALT5Q9Y2C3 310 aa3.28□□□□□ -1.88
VPS50-219ENST00000495039 TMEM184BQ9Y519 407 aaPredicted RBP3.28□□□□□ -1.88
VPS50-219ENST00000495039 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.28□□□□□ -1.88
VPS50-219ENST00000495039 ZNF644Q9H582 1327 aaPredicted RBP3.27□□□□□ -1.89
VPS50-219ENST00000495039 OR2A25A4D2G3 310 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 TMEM8BA6NDV4 472 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 TMEM189-UBE2V1I3L0A0 370 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 GJB3O75712 270 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 RSL1D1O76021 490 aaKnown RBP3.27□□□□□ -1.89
VPS50-219ENST00000495039 IGKV3-15P01624 115 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 MMP9P14780 707 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 ACSL1P33121 698 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 PGFP49763 221 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 SUOXP51687 545 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 STK4Q13043 487 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 UBE2V1Q13404 147 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 KRT33BQ14525 404 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 MVPQ14764 893 aaKnown RBP3.27□□□□□ -1.89
VPS50-219ENST00000495039 DLG2Q15700 870 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 PLD3Q8IV08 490 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 CEP97Q8IW35 865 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 SLC39A11Q8N1S5 342 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 Q8N377 158 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 TMEM178AQ8NBL3 297 aa3.27□□□□□ -1.89
VPS50-219ENST00000495039 RSRC1Q96IZ7 334 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms