RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DFNA5O60443 496 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 GREM1O60565 184 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 C1QCP02747 245 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 CKMP06732 381 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 HMOX2P30519 316 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 MTHFRP42898 656 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 ERVK-8P63133 956 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 HMGCS1Q01581 520 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 GTF2H2Q13888 395 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 DEFB115Q30KQ5 88 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 TMTC4Q5T4D3 741 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 GTF2H2CQ6P1K8 395 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 TXNDC11Q6PKC3 985 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 BBS7Q8IWZ6 715 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 HS6ST3Q8IZP7 471 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 CENPSQ8N2Z9 138 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 OR10A6Q8NH74 314 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 TMEM169Q96HH4 297 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 LIMD1Q9UGP4 676 aa16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 RANBP2P49792 3224 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-210ENST00000494566 PITPNM1O00562 1244 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 DIRAS1O95057 198 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 CD70P32970 193 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 MTA1Q13330 715 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 EGFLAMQ63HQ2 1017 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 LCN8Q6JVE9 175 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 CCDC81Q6ZN84 652 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 ANKRD46Q86W74 232 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 FRS2Q8WU20 508 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 OVCA2Q8WZ82 227 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 CCDC138Q96M89 665 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 RHNO1Q9BSD3 238 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 VPS9D1Q9Y2B5 631 aa16.21■□□□□ 0.18
CCDC88B-210ENST00000494566 MICAL3Q7RTP6 2002 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TAPBPO15533 448 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 EFEMP2O95967 443 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 SOD2P04179 222 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TGFBR1P36897 503 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 CLCN4P51793 760 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TUBA4AP68366 448 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 HTRA3P83110 453 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 CHRNA6Q15825 494 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 SPATA19Q7Z5L4 167 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TMEM199Q8N511 208 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TNIP2Q8NFZ5 429 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 ITFG1Q8TB96 612 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 GFM2Q969S9 779 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 ACDQ96AP0 544 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TOR3AQ9H497 397 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 ACTL8Q9H568 366 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 IKZF5Q9H5V7 419 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNHIT2Q9UHR6 403 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 COQ6Q9Y2Z9 468 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 VCANP13611 3396 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 A0A1W2PQ67 120 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 TCRBV5S2A0A599 114 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 AQP12BA6NM10 295 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 HSD17B1P14061 328 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 BPIP17213 487 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 MAGP20916 626 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 GABRR2P28476 465 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 BCL2L1Q07817 233 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 NFATC3Q12968 1075 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 NKG7Q16617 165 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 AQP12AQ8IXF9 295 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 RNF168Q8IYW5 571 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 DDHD1Q8NEL9 900 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNF296Q8WUU4 475 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 INSL5Q9Y5Q6 135 aa16.2■□□□□ 0.18
CCDC88B-210ENST00000494566 H7C0S8 307 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 GSTA4O15217 222 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 EFNA1P20827 205 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 RAD23AP54725 363 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 RPL38P63173 70 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 DEFB103AP81534 67 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 NFATC2Q13469 925 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 AP5B1Q2VPB7 878 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 DGKKQ5KSL6 1271 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 INTS11Q5TA45 600 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 PRR23BQ6ZRT6 265 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 TMCO5AQ8N6Q1 288 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 HJURPQ8NCD3 748 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNF382Q96SR6 550 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 C1QTNF3Q9BXJ4 246 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 NUSAP1Q9BXS6 441 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 LATS2Q9NRM7 1088 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 CFAP97Q9P2B7 532 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 MBD1Q9UIS9 605 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 CRLS1Q9UJA2 301 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 PNMA8BQ9ULN7 279 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 TYW5A2RUC4 315 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 H0Y858 1186 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 HS6ST1O60243 411 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 BCL10O95999 233 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 SLC2A4P14672 509 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 CCNA2P20248 432 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 LMAN2Q12907 356 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 SPCS2Q15005 226 aa16.19■□□□□ 0.18
CCDC88B-210ENST00000494566 INO80DQ53TQ3 878 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms