RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 LARSQ9P2J5 1176 aaKnown RBP3.42□□□□□ -1.86
VPS41-213ENST00000485955 PLAGL1Q9UM63 463 aa3.42□□□□□ -1.86
VPS41-213ENST00000485955 MRC2Q9UBG0 1479 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 A0A0J9YWU9 116 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 LOC101059948A0A1B0GTJ6 334 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 LNP1A1A4G5 178 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 CDC123O75794 336 aaPredicted RBP3.41□□□□□ -1.86
VPS41-213ENST00000485955 MOCS3O95396 460 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 EFNA1P20827 205 aaPredicted RBP3.41□□□□□ -1.86
VPS41-213ENST00000485955 CA4P22748 312 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 SP100P23497 879 aaPredicted RBP3.41□□□□□ -1.86
VPS41-213ENST00000485955 SLC6A12P48065 614 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 LMO4P61968 165 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 TMF1P82094 1093 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 CXCL9Q07325 125 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 KRT33BQ14525 404 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 SLC1A5Q15758 541 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 KRTAP5-4Q6L8H1 288 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 MAATS1Q7Z4T9 603 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 PIGZQ86VD9 579 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 DCLK2Q8N568 766 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 ZNF614Q8N883 585 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 OR13J1Q8NGT2 312 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 OR2AJ1Q8NGZ0 328 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 FGFBP3Q8TAT2 258 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 C18orf12Q96KH6 178 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 IWS1Q96ST2 819 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 PYGO2Q9BRQ0 406 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 CABLES2Q9BTV7 478 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 RTN4RQ9BZR6 473 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 SMARCAD1Q9H4L7 1026 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 CHMP1AQ9HD42 196 aaPredicted RBP3.41□□□□□ -1.86
VPS41-213ENST00000485955 RNF186Q9NXI6 227 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 FLRT3Q9NZU0 649 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 SEC63Q9UGP8 760 aaKnown RBP3.41□□□□□ -1.86
VPS41-213ENST00000485955 HACL1Q9UJ83 578 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 LAMC3Q9Y6N6 1575 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 NCAPD3P42695 1498 aa3.41□□□□□ -1.86
VPS41-213ENST00000485955 CLASP1Q7Z460 1538 aa3.4□□□□□ -1.86
VPS41-213ENST00000485955 ZNF608Q9ULD9 1512 aaPredicted RBP3.4□□□□□ -1.86
VPS41-213ENST00000485955 MSGN1A6NI15 193 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 LRRC72A6NJI9 287 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 SLCO1B7G3V0H7 640 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 VILLO15195 856 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 PAPSS1O43252 624 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 XRCC3O43542 346 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 DOK2O60496 412 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 ZWINTO95229 277 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 GPIP06744 558 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 GABRA5P31644 462 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 SNX16P57768 344 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 DSCR10P59022 87 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 ARF3P61204 181 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 ARF1P84077 181 aaKnown RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 KLHL26Q53HC5 615 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 RAB41Q5JT25 222 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 PSRC1Q6PGN9 363 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 FIGLAQ6QHK4 219 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 RSRC2Q7L4I2 434 aaKnown RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 LDB1Q86U70 411 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 OR5M8Q8NGP6 311 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 EVI5LQ96CN4 794 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 SAT2Q96F10 170 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 NSL1Q96IY1 281 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 MCRIP2Q9BUT9 160 aaKnown RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 KCNK15Q9H427 330 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 SDR39U1Q9NRG7 319 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 ZNF701Q9NV72 531 aaPredicted RBP3.4□□□□□ -1.87
VPS41-213ENST00000485955 OSGIN1Q9UJX0 560 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 MTUS1Q9ULD2 1270 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 SMAD5-AS1Q9Y6J3 95 aa3.4□□□□□ -1.87
VPS41-213ENST00000485955 E9PQ18 207 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 GAPDHSO14556 408 aaPredicted RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 AP3D1O14617 1153 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 DCXO43602 365 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 KHDRBS3O75525 346 aaKnown RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 PRKRAO75569 313 aaKnown RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 DUS4LO95620 317 aaKnown RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 TYMPP19971 482 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 CAPN3P20807 821 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 MAGEA11P43364 429 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 CX3CL1P78423 397 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 HNRNPDQ14103 355 aaKnown RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 TEAD2Q15562 447 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 CTU2Q2VPK5 515 aaKnown RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 C1orf122Q6ZSJ8 110 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 CEP57L1Q8IYX8 460 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 SPEM1Q8N4L4 309 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 FNBP1Q96RU3 617 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 S1PR5Q9H228 398 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 DPAGT1Q9H3H5 408 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 ATP13A3Q9H7F0 1226 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 WSB2Q9NYS7 404 aaPredicted RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 ZNF69Q9UC07 566 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 TUBE1Q9UJT0 475 aa3.39□□□□□ -1.87
VPS41-213ENST00000485955 ZHX1Q9UKY1 873 aaPredicted RBP3.39□□□□□ -1.87
VPS41-213ENST00000485955 A0A1W2PN81 502 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 HYKKA2RU49 373 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 OR2A25A4D2G3 310 aa3.38□□□□□ -1.87
VPS41-213ENST00000485955 AGAP14A8MT82 685 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms