RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 A0A1W2PQ09 198 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 LNP1A1A4G5 178 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 OR2A25A4D2G3 310 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 GPR137BO60478 399 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 CAVIN2O95810 425 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 TUBBP07437 444 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 CALRP27797 417 aaKnown RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 EPS8Q12929 822 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 CHAF1BQ13112 559 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 RBM39Q14498 530 aaKnown RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 WTAPQ15007 396 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 WDR38Q5JTN6 314 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 TEX35Q5T0J7 233 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 SPATA1Q5VX52 437 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 FASTKD5Q7L8L6 764 aaKnown RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 GRAPLQ8TC17 118 aaPredicted RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 ZNF473Q8WTR7 871 aaKnown RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 SEMA4DQ92854 862 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 CFAP53Q96M91 514 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 RTN4RQ9BZR6 473 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 SLC38A7Q9NVC3 462 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 CGNQ9P2M7 1197 aaKnown RBP5.54□□□□□ -1.52
USP40-213ENST00000483216 ACAD8Q9UKU7 415 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 GPR34Q9UPC5 381 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 JRKLQ9Y4A0 524 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 NCOA3Q9Y6Q9 1424 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 FRMPD1Q5SYB0 1578 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 IFT172Q9UG01 1749 aa5.54□□□□□ -1.52
USP40-213ENST00000483216 PMS2P5A8MQ11 134 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 KIF2AO00139 706 aaPredicted RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 CTDSP2O14595 271 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 SOCS5O75159 536 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 INHBAP08476 426 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 MSH3P20585 1137 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 GCH1P30793 250 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 CASP2P42575 452 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 SNRPEP62304 92 aaKnown RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 CUL4AQ13619 759 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 TECRLQ5HYJ1 363 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 KRT79Q5XKE5 535 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 GSG1LQ6UXU4 331 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 ANO5Q75V66 913 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 GPALPP1Q8IXQ4 340 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 C17orf53Q8N3J3 647 aaPredicted RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 POC5Q8NA72 575 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 TM9SF4Q92544 642 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 ZNF524Q96C55 264 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 FBXO17Q96EF6 278 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 PRMT6Q96LA8 375 aaPredicted RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 DUX3Q96PT4 197 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 PPIL3Q9H2H8 161 aaKnown RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 MBNL1Q9NR56 388 aaKnown RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 MIOSQ9NXC5 875 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 ARHGEF38Q9NXL2 777 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 PLAGL1Q9UM63 463 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 SYNMO15061 1565 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 ADGRB3O60242 1522 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 MROH2AA6NES4 1674 aa5.53□□□□□ -1.52
USP40-213ENST00000483216 VIRMAQ69YN4 1812 aaKnown RBP5.53□□□□□ -1.52
USP40-213ENST00000483216 ABCA6Q8N139 1617 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 RICTORQ6R327 1708 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 NEMFO60524 1076 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 FGF5P12034 268 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 MFAP5Q13361 173 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 FAM98BQ52LJ0 330 aaKnown RBP5.52□□□□□ -1.53
USP40-213ENST00000483216 RILPL1Q5EBL4 403 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 BMP2KLQ5H9B9 411 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 GCNT6Q5T4J0 391 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 SFMBT2Q5VUG0 894 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 KLC3Q6P597 504 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 ZNF449Q6P9G9 518 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 AACSQ86V21 672 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 KLHDC8BQ8IXV7 354 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 L3MBTL4Q8NA19 623 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 OR10V1Q8NGI7 309 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 PIBF1Q8WXW3 757 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 KCNK15Q9H427 330 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 OSGEPL1Q9H4B0 414 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 SLA2Q9H6Q3 261 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 NSMCE4AQ9NXX6 385 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 PSD3Q9NYI0 1048 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 TAS2R14Q9NYV8 317 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 MDFICQ9P1T7 246 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 LARSQ9P2J5 1176 aaKnown RBP5.52□□□□□ -1.53
USP40-213ENST00000483216 ADD3Q9UEY8 706 aaKnown RBP5.52□□□□□ -1.53
USP40-213ENST00000483216 GAB2Q9UQC2 676 aa5.52□□□□□ -1.53
USP40-213ENST00000483216 NRXN1Q9ULB1 1477 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 UGGT1Q9NYU2 1555 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 KDM5AP29375 1690 aaKnown RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 hCG_1807616A0A1W2PRN6 198 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 TO15178 435 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 SYNCRIPO60506 623 aaKnown RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 REC8O95072 547 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 AMBPP02760 352 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 H1F0P07305 194 aaKnown RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 TPM1P09493 284 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 CFC1BP0CG36 223 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 CFC1P0CG37 223 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 TNNT3P45378 269 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms