RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GLUD2P49448 558 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 CLK1P49759 484 aaKnown RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 MAPK12P53778 367 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 UBASH3AP57075 661 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 EGR4Q05215 589 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 PLA2G7Q13093 441 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 TRAF3Q13114 568 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 RCN2Q14257 317 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 RABEP1Q15276 862 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 FUT11Q495W5 492 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 KLC3Q6P597 504 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 GET4Q7L5D6 327 aaPredicted RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 TMPRSS11BQ86T26 416 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 SIAH3Q8IW03 269 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 PGBD5Q8N414 524 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 PPFIBP2Q8ND30 876 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 OR5M8Q8NGP6 311 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 B4GALNT2Q8NHY0 566 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 NTN5Q8WTR8 489 aaPredicted RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 TANKQ92844 425 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 RPL36ALQ969Q0 106 aaKnown RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 DHX58Q96C10 678 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 SNRNP40Q96DI7 357 aaKnown RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 C3orf30Q96M34 536 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 SORCS2Q96PQ0 1159 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 ACAT2Q9BWD1 397 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 LRMDAQ9H2I8 198 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 CDH20Q9HBT6 801 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 TCP11L1Q9NUJ3 509 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 MIOSQ9NXC5 875 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 INSL5Q9Y5Q6 135 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 CKAP5Q14008 2032 aa4.92□□□□□ -1.62
UPF3B-203ENST00000478840 PDS5AQ29RF7 1337 aaKnown RBP4.92□□□□□ -1.62
UPF3B-203ENST00000478840 ZCWPW2A0A1B0GU75 182 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SDR42E2A6NKP2 422 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SELENOFO60613 162 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 KCNJ13O60928 360 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 KERAO60938 352 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 BMP10O95393 424 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 ACSL3O95573 720 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 TOMM40O96008 361 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 RLN1P04808 185 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 LINC00271P0C7V0 271 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 FAM106CPP0CH98 169 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 AZGP1P25311 298 aaKnown RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 CD38P28907 300 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 TMPOP42166 694 aaKnown RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 FRKP42685 505 aaPredicted RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 RGS7P49802 495 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 PGGT1BP53609 377 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 MFAP3P55082 362 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 ST8SIA6P61647 398 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 CUL3Q13618 768 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 KLF9Q13886 244 aaPredicted RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 CALCRLQ16602 461 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SLC39A12Q504Y0 691 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 TMEM35AQ53FP2 167 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SYT14P1Q58G82 188 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 XKR9Q5GH70 373 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF449Q6P9G9 518 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 PLEKHM3Q6ZWE6 761 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 TECPR1Q7Z6L1 1165 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 NDUFAF2Q8N183 169 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 CLIP4Q8N3C7 705 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 GBGT1Q8N5D6 347 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 NRACQ8N912 160 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 UXS1Q8NBZ7 420 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF114Q8NC26 417 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SPATA20Q8TB22 786 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SSMEM1Q8WWF3 244 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SYN2Q92777 582 aaPredicted RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 DAZLQ92904 295 aaKnown RBP4.91□□□□□ -1.62
UPF3B-203ENST00000478840 PHF21AQ96BD5 680 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 CENPTQ96BT3 561 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SCMH1Q96GD3 660 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 AK8Q96MA6 479 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 DNAJC4Q9NNZ3 241 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SMARCAL1Q9NZC9 954 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF224Q9NZL3 707 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 C11orf21Q9P2W6 132 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 LRWD1Q9UFC0 647 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 SIX4Q9UIU6 781 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 PCDHGA1Q9Y5H4 931 aa4.91□□□□□ -1.62
UPF3B-203ENST00000478840 A0A1W2PPK0 400 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 A0A1W2PRV1 198 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MED19A0JLT2 244 aaPredicted RBP4.9□□□□□ -1.63
UPF3B-203ENST00000478840 LINC01553A4QN01 128 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 C5orf60A6NFR6 353 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 PPEF2O14830 753 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 FCGR3BO75015 233 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 LDB3O75112 727 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 KDM4BO94953 1096 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 PGLSO95336 258 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SLC16A8O95907 504 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 HOXC6P09630 235 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SPP1P10451 314 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 MYOD1P15172 320 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CSF2RAP15509 400 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 CD27P26842 260 aa4.9□□□□□ -1.63
UPF3B-203ENST00000478840 SLC6A6P31641 620 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms