RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KCNMB2Q9Y691 235 aa13.68□□□□□ -0.22
UPF3A-204ENST00000475218 FER1L5A0AVI2 2057 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 PCSK5Q92824 1860 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 TCRBV7S3A2A0A539 114 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 K7EM74 188 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 IFRD1O00458 451 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-204ENST00000475218 HCRTR1O43613 425 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 KATNA1O75449 491 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 CCDC175P0C221 793 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 MSL3P1P0C860 447 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 CCR7P32248 378 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 CXCR5P32302 372 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 RPS18P62269 152 aaKnown RBP13.67□□□□□ -0.22
UPF3A-204ENST00000475218 ERV3-1Q14264 604 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 ARMC6Q6NXE6 501 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 OR4L1Q8NH43 312 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 OR1L3Q8NH93 324 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 ELMO1Q92556 727 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 TRAPPC9Q96Q05 1148 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 ACTL8Q9H568 366 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 EIF2B3Q9NR50 452 aaKnown RBP13.67□□□□□ -0.22
UPF3A-204ENST00000475218 LATS2Q9NRM7 1088 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 KCND1Q9NSA2 647 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 TREX1Q9NSU2 369 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 SPHK1Q9NYA1 384 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 ACTR10Q9NZ32 417 aa13.67□□□□□ -0.22
UPF3A-204ENST00000475218 GSAPA4D1B5 854 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 IQCF5A8MTL0 148 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 E7EVH7 732 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 H3BMH7 237 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CREG1O75629 220 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 SCRG1O75711 98 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 FGGP02679 453 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CDH3P22223 829 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 ARNTP27540 789 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PEBP1P30086 187 aaKnown RBP13.66□□□□□ -0.22
UPF3A-204ENST00000475218 RORAP35398 523 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 LMAN1P49257 510 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 ARL4DP49703 201 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 MC1RQ01726 317 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 ZIC1Q15915 447 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PLEKHS1Q5SXH7 462 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 UNC5AQ6ZN44 842 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 TRIM73Q86UV7 250 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PTRH1Q86Y79 214 aaKnown RBP13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PRELID2Q8N945 189 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CCDC89Q8N998 374 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 APOBEC4Q8WW27 367 aaKnown RBP13.66□□□□□ -0.22
UPF3A-204ENST00000475218 ALS2CR12Q96Q35 445 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 OR2A14Q96R47 310 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 MENTQ9BUN1 341 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 FAM117AQ9C073 453 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 FAM60AQ9NP50 221 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 SOHLH2Q9NX45 425 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 RELNP78509 3460 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 GOLGA6L6A8MZA4 724 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 C21orf140B9A014 251 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 MATN2O00339 956 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 FTH1P02794 183 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 MT-ND3P03897 115 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CAPN1P07384 714 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CTSBP07858 339 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CCNYL3P0C7X3 344 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 GABRA4P48169 554 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PRKAA1Q13131 559 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 IL10RAQ13651 578 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 FAM69BQ5VUD6 431 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CYB5D1Q6P9G0 228 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CDHR3Q6ZTQ4 885 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PEX13Q92968 403 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 ABHD17AQ96GS6 310 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 PLAGL1Q9UM63 463 aa13.66□□□□□ -0.22
UPF3A-204ENST00000475218 CPNE3O75131 537 aaKnown RBP13.65□□□□□ -0.22
UPF3A-204ENST00000475218 GPC4O75487 556 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 UGT2B7P16662 529 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 NR1D1P20393 614 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 NMBRP28336 390 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 SESN2P58004 480 aaPredicted RBP13.65□□□□□ -0.22
UPF3A-204ENST00000475218 GRB7Q14451 532 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 LYPLAL1Q5VWZ2 237 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 TTC27Q6P3X3 843 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 SPESP1Q6UW49 350 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 TMEM126BQ8IUX1 230 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 TBC1D21Q8IYX1 336 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 SLC22A15Q8IZD6 547 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 LMNTD1Q8N9Z9 388 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 OR6P1Q8NGX9 317 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 OR8K5Q8NH50 307 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 OR5K2Q8NHB8 316 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 LRFN5Q96NI6 719 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 P2RY12Q9H244 342 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 CHST8Q9H2A9 424 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 ZNF71Q9NQZ8 489 aaPredicted RBP13.65□□□□□ -0.22
UPF3A-204ENST00000475218 KCND3Q9UK17 655 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 ASF1AQ9Y294 204 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 ZKSCAN5Q9Y2L8 839 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 PPP2R2CQ9Y2T4 447 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 PCDHB3Q9Y5E6 796 aa13.65□□□□□ -0.22
UPF3A-204ENST00000475218 C2orf74A8MZ97 194 aa13.64□□□□□ -0.23
UPF3A-204ENST00000475218 QSOX1O00391 747 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms