RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	HYKK	A2RU49	373 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	NEMP2	A6NFY4	417 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044		E9PI62	339 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	CAPN9	O14815	690 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	BUB3	O43684	328 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	RNASEH1	O60930	286 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	IGHV2-70	P01814	119 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	ACP2	P11117	423 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	SCG2	P13521	617 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	PAX1	P15863	534 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	NR1D1	P20393	614 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	PTAFR	P25105	342 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	MARK3	P27448	753 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	ASCL1	P50553	236 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	DLX5	P56178	289 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	RPS18	P62269	152 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	RPL36A	P83881	106 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	MAT1A	Q00266	395 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	ARL16	Q0P5N6	197 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	DMP1	Q13316	513 aa	Predicted RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	PPIG	Q13427	754 aa	Known RBP eCLIP	3.58	□□□□□ -1.84	1e-7	■■□□□ 13.3
PTCD3-209	ENST00000472044	TNIP1	Q15025	636 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	IL27RA	Q6UWB1	636 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	DET1	Q7L5Y6	550 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	COMMD2	Q86X83	199 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	PLD3	Q8IV08	490 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	KBTBD3	Q8NAB2	608 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	OR2T12	Q8NG77	320 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	OR13A1	Q8NGR1	328 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF473	Q8WTR7	871 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	ROBO4	Q8WZ75	1007 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	FER1L6-AS2	Q96M78	137 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	SFXN2	Q96NB2	322 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	FEV	Q99581	238 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	TRMT61B	Q9BVS5	477 aa	Known RBP	3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	OLFML3	Q9NRN5	406 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	SERINC1	Q9NRX5	453 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	SLC38A7	Q9NVC3	462 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	LRWD1	Q9UFC0	647 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	PADI2	Q9Y2J8	665 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	LIPG	Q9Y5X9	500 aa		3.58	□□□□□ -1.84
PTCD3-209	ENST00000472044	BMPR1B	O00238	502 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MEIS2	O14770	477 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	OR52Z1	P0C646	297 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	EEF1B2	P24534	225 aa	Known RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	DCT	P40126	519 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	CCR10	P46092	362 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	DVL1P1	P54792	670 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	TPD52	P55327	224 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ROR1	Q01973	937 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ACSM1	Q08AH1	577 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF273	Q14593	569 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	WDR81	Q562E7	1941 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MFSD12	Q6NUT3	480 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	C18orf65	Q6ZTR6	163 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	SMIM29	Q86T20	159 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	NUDT13	Q86X67	352 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	VSIG1	Q86XK7	387 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MFN1	Q8IWA4	741 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	FAM114A1	Q8IWE2	563 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	TRIML1	Q8N9V2	468 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	CAMKV	Q8NCB2	501 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	SLC24A4	Q8NFF2	622 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	DMBX1	Q8NFW5	382 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	KIF18A	Q8NI77	898 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	FGFBP3	Q8TAT2	258 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MRPS27	Q92552	414 aa	Known RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	SECISBP2L	Q93073	1101 aa	Known RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ST6GAL2	Q96JF0	529 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF583	Q96ND8	569 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MUS81	Q96NY9	551 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	RAB3IP	Q96QF0	476 aa	Predicted RBP	3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044		Q9N2K0	584 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MYNN	Q9NPC7	610 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZFP57	Q9NU63	452 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	DONSON	Q9NYP3	566 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	B3GAT1	Q9P2W7	334 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ZNF580	Q9UK33	172 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	ACAD8	Q9UKU7	415 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	MTUS1	Q9ULD2	1270 aa		3.57	□□□□□ -1.84
PTCD3-209	ENST00000472044	KIAA1210	Q9ULL0	1709 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044		A0A1W2PN81	502 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044		A0A1W2PRB8	838 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044		A0A1W2PRQ8	180 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	FAM172BP	A6NC97	362 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	CLDN4	O14493	209 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	SYNCRIP	O60506	623 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	EIF5B	O60841	1220 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	TBCA	O75347	108 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	HSPA4L	O95757	839 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	CRYAA	P02489	173 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	ATP1A1	P05023	1023 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	ATP5B	P06576	529 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	IFNAR1	P17181	557 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	MSH3	P20585	1137 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	MPZ	P25189	248 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	HOXC8	P31273	242 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	CHRNA7	P36544	502 aa		3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	POLR2L	P62875	67 aa	Known RBP	3.56	□□□□□ -1.84
PTCD3-209	ENST00000472044	CAMK2D	Q13557	499 aa		3.56	□□□□□ -1.84

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